View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_high_2 (Length: 526)
Name: NF18353_high_2
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 47933805 - 47933299
Alignment:
| Q |
1 |
ctcactgacaagaacccataaacaaaggtaacagaggagcttttccgttcaaaatattttacaaacacactaaatcagtgctagagtgtagtcttagggt |
100 |
Q |
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| T |
47933805 |
ctcactgacaagaaaccataaacaaaggtaacagaggagcttttccgttcaaaatattttacaaacacactaaatcagtgctagagtgtagtcttagggt |
47933706 |
T |
|
| Q |
101 |
gaaaaagagttaaggtcgccaacagtgctgaaaactctatacaaggctttcactattgatgatacagtgtaaggaacaaagggtaggaatgtgaaagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47933705 |
gaaaaagagttaaggtcgccaacagtgctgaaaactctatgtaaggctttcactattgatgatacagtgtaatgaacaaagggtaggaatgtgaaagaat |
47933606 |
T |
|
| Q |
201 |
ttgaaacaatatggtatgcaagaacttgaggcacttccaaactataatatattatagcttctcatgtcctgacctcacatcattaaaataaggtgaattt |
300 |
Q |
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| T |
47933605 |
ttgaaacaat-tggtatgcaagaacttgaggcacttccgaactataatatattatagcttctcatgtcctgacctcacatcattaaaataaggtgaattt |
47933507 |
T |
|
| Q |
301 |
gatagtcaacttgattgccaagacgattctatcttagacttgttcaacgaagaagaagatcatctcatggaggcaatggccacttggtttcattcccttg |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933506 |
gatagtcaacttgattgcctagacgattctatcttagacttgttcaacgaagaagcagatcatctcatggaggcaatggccacttggtttcattcccttg |
47933407 |
T |
|
| Q |
401 |
gaattttcggaaaaaaggtcaatttttcaaactgatcctacagaatatacgcggaagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933406 |
gaattttcggaaaaaaggtcaatttttcaaactgatcctacagaatatacgc-gaagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttt |
47933308 |
T |
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| Q |
501 |
tcttcctct |
509 |
Q |
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| T |
47933307 |
tcttcctct |
47933299 |
T |
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