View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18353_low_1 (Length: 548)

Name: NF18353_low_1
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18353_low_1
NF18353_low_1
[»] chr8 (2 HSPs)
chr8 (20-536)||(15755486-15756014)
chr8 (201-526)||(18945565-18945889)
[»] scaffold0384 (1 HSPs)
scaffold0384 (156-536)||(972-1352)
[»] chr6 (9 HSPs)
chr6 (18-255)||(17118244-17118497)
chr6 (156-333)||(17118516-17118693)
chr6 (222-529)||(13139393-13139713)
chr6 (174-284)||(6340628-6340738)
chr6 (18-152)||(13139790-13139924)
chr6 (43-105)||(26628696-26628758)
chr6 (43-105)||(26734672-26734734)
chr6 (300-366)||(20071689-20071755)
chr6 (414-523)||(17118711-17118820)
[»] chr4 (3 HSPs)
chr4 (171-404)||(17127986-17128219)
chr4 (171-514)||(19805856-19806199)
chr4 (191-243)||(16985044-16985096)
[»] chr2 (3 HSPs)
chr2 (173-448)||(13129009-13129284)
chr2 (174-284)||(28015657-28015767)
chr2 (174-284)||(20485423-20485533)
[»] chr3 (2 HSPs)
chr3 (192-448)||(55308395-55308651)
chr3 (173-281)||(8834467-8834575)
[»] chr5 (2 HSPs)
chr5 (173-448)||(26470317-26470592)
chr5 (171-448)||(16992425-16992702)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Original strand, 15755486 - 15756014
Alignment:
Q  20 tgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgatgg 119  Q
    |||||||||| ||||||||||||||||||||||||||||    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15755486 tgttagttacacctcttcttgacggttctaactacctcg----gcatcattctatgaaacgcgctttaggcgccaagaacaagctttcctttgttgatgg 15755581  T
Q  120 atctatctcaatccctcctcttgatgatttgaa----------------cgttgtaactacttgctccattcttggattctggattttgtttctcctcaa 203  Q
    |||||||  ||||||||||||||||||||||||                |||||||||| |||| ||||||||||||||||| ||| |||||||||| ||    
T  15755582 atctatcctaatccctcctcttgatgatttgaatcgaagtgtttgggaacgttgtaactccttgatccattcttggattctgaattctgtttctccttaa 15755681  T
Q  204 atcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcattac 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15755682 atcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcattat 15755781  T
Q  304 gtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctat 403  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  15755782 gtactactatcaacaatttgaaacaaggaaccaagtttgtgcttgaatacttcactgagttgaaatcactttgggaagagcttaattctcattgtcctat 15755881  T
Q  404 gactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttg 503  Q
    | |||| || |||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  15755882 gcctatgtgcacttgtcctcatccctgtcgttgtgaatccatgagatcagctcgaaattttcgtttggaggaccaaatcattcaatttctcactggtttg 15755981  T
Q  504 aatgataattttggagttgtgaaaacacaggtt 536  Q
    |||||||||||||||||||||||||||||||||    
T  15755982 aatgataattttggagttgtgaaaacacaggtt 15756014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 526
Target Start/End: Complemental strand, 18945889 - 18945565
Alignment:
Q  201 caaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttcat 300  Q
    ||||| |||||||| || || |||||||| |||  ||||||||| ||||||||    |||||||| ||||| ||||||||| || |  |  || |||||     
T  18945889 caaattgctcaaactattgtgtttcatgagtacaacattgatgtttggattgaatcacaagaacgtttttcgaaggttgatcgaatttgtgttgcttcac 18945790  T
Q  301 tacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcc 400  Q
    | ||| || | ||||||||||||||||| ||    || | ||  ||||| |||||||| ||| ||||||| |||||||| |||||||| | ||||| |||    
T  18945789 ttcgttcttcaatcaacaatttgaaacagggtgataaatctgaacttgattacttcacagagatgaaatccctttgggaggagcttaactctcatc-tcc 18945691  T
Q  401 tatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagt 500  Q
     ||| |||| || ||||||||| |||| || || ||||||||||||||  | ||||  ||||||    |||| || ||| | ||||||||||||||| ||    
T  18945690 catgcctatgtgtacttgtccttatccatgccgttgtgaatccatgcgtactgctcgcaattttagaatggaagatcaagtgattcaatttctcactggt 18945591  T
Q  501 ttgaatgataattttggagttgtgaa 526  Q
    |||||||| ||||||  |||||||||    
T  18945590 ttgaatgacaatttttcagttgtgaa 18945565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 156 - 536
Target Start/End: Original strand, 972 - 1352
Alignment:
Q  156 tgtaactacttgctccattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 255  Q
    ||||||||| || | |||||||||||  |  ||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  972 tgtaactacatggttcattcttggatcatcaattttgtttctccacaaattgctcaaactatcgtatttcatgaatatgccattgatgtttggattgagc 1071  T
Q  256 ttcaagaacgcttttctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatactt 355  Q
    |||||||||| || || || ||||||| | ||| |||| ||||||||||| |  |||||||||||||||||||| |||| || |||||||||||||||||    
T  1072 ttcaagaacgtttctccaaagttgatataatcataattgcttcattacgttcatctatcaacaatttgaaacaacgaacaaagtttgtgcttgaatactt 1171  T
Q  356 cactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagct 455  Q
    ||||||| ||||||| |||||||||||||| ||||  ||||| |||||| || | || |||||||||||||||| ||| |||||||| ||| | ||| |     
T  1172 cactgagatgaaatctctttgggaagagctcaattcccatcgccctatgcctgtgtgtacttgtcctcatccctatcgttgtgaatctatgaggtcaaca 1271  T
Q  456 caaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataattttggagttgtgaaaacacaggtt 536  Q
    | | | |||| ||||||||||||| | |||||||| || ||| |||||||||| || ||||||||||||||||| ||||||    
T  1272 cgagaatttcgtttggaggaccaagtgattcaattcctaactggtttgaatgacaactttggagttgtgaaaactcaggtt 1352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 17118244 - 17118497
Alignment:
Q  18 tgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgat 117  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  || | ||||| || |||||||| |||||||||||||||    
T  17118244 tgtgatagttacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgat 17118343  T
Q  118 ggatctatctcaatccctcctcttgatgatttgaa-cgt---------------tgtaactacttgctccattcttggattctggattttgtttctcctc 201  Q
    ||||| ||  ||||||||||| ||||||||||||| |||               ||||||||| || |||||| ||||||| || | | |||||||||||    
T  17118344 ggatcaattccaatccctcctattgatgatttgaaccgtagtgcttgggaacactgtaactacctgatccatttttggattttgaactctgtttctcctc 17118443  T
Q  202 aaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 255  Q
    |||| ||||| || || ||||| ||||||||  |||||||||||||||||||||    
T  17118444 aaattgctcagactatagtattccatgaatataccattgatgtatggattgagc 17118497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 17118516 - 17118693
Alignment:
Q  156 tgtaactacttgctccattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagc 255  Q
    ||||||||| || |||||||||||||| || | | |||||||| |||||| ||||| || || ||||| |||||||||||||||||||||||||||||||    
T  17118516 tgtaactacctgatccattcttggattttgaactctgtttctcgtcaaattgctcagactatagtattccatgaatacgccattgatgtatggattgagc 17118615  T
Q  256 ttcaagaacgcttttctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaa 333  Q
    ||||||||||| | |||||||||| |||||| | ||||||||| |||| | |||  || ||||| ||||| |||||||    
T  17118616 ttcaagaacgcctctctaaggttggtagagtaataatttcttctttacattctgtcattaacaacttgaagcaaggaa 17118693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 529
Target Start/End: Complemental strand, 13139713 - 13139393
Alignment:
Q  222 tttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaatttcttc----------at----tacgtac 307  Q
    |||||||||||| |||||| ||| |||||||||||||||||||| || ||||| ||||||||||| |||||| ||||          ||    || | |     
T  13139713 tttcatgaatacaccattgttgtctggattgagcttcaagaacgtttctctaatgttgatagagtaagaattgcttctctaatgttgatagggtaagaat 13139614  T
Q  308 tgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgact 407  Q
    |||| ||||||| |||||||||||||| || | ||||||||| ||||| |||||| || |||| |||||  |||| || |||| |||||| || ||  ||    
T  13139613 tgct-tcaacaacttgaaacaaggaacaaaatatgtgcttgattactttactgagatgtaatctctttgttaagaactcaattctcatcgcccaatacct 13139515  T
Q  408 atatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatg 507  Q
    || || |||| ||||||||| ||||| |||||||||||| |||| | ||| ||||||| ||| ||||  ||  ||||||| |||||||||   |||||||    
T  13139514 atgtgcacttatcctcatccttgtcgttgtgaatccatgagatcggttcataattttcgtttagaggttcaggtcattcagtttctcactgacttgaatg 13139415  T
Q  508 ataattttggagttgtgaaaac 529  Q
    | |||||||||||| |||||||    
T  13139414 agaattttggagttatgaaaac 13139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 6340628 - 6340738
Alignment:
Q  174 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 273  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||||| || |||||||    
T  6340628 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcaagagcgtttttcta 6340727  T
Q  274 aggttgataga 284  Q
    | |||||||||    
T  6340728 aagttgataga 6340738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 13139924 - 13139790
Alignment:
Q  18 tgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgttgat 117  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||  | |  || || || |||||||| |||   |||||||||    
T  13139924 tgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttctatgaagcgtgagttgggagcgaagaacaaacttgattttgttgat 13139825  T
Q  118 ggatctatctcaatccctcctcttgatgatttgaa 152  Q
    ||||| ||  |||||||||||  ||||||||||||    
T  13139824 ggatcaattccaatccctcctgctgatgatttgaa 13139790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
Q  43 ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt 105  Q
    |||||||||||||||||||||  |||||||||| || | |||||||| |||||||| ||||||    
T  26628696 ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt 26628758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
Q  43 ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt 105  Q
    |||||||||||||||||||||  |||||||||| || | |||||||| |||||||| ||||||    
T  26734672 ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt 26734734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 20071689 - 20071755
Alignment:
Q  300 ttacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttga 366  Q
    |||||| || ||||||  || ||||||||||  || |||||||||||||| ||||||||||||||||    
T  20071689 ttacgttcttctatcagtaagttgaaacaagatacaaattttgtgcttgactacttcactgagttga 20071755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 523
Target Start/End: Original strand, 17118711 - 17118820
Alignment:
Q  414 acttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataatt 513  Q
    |||||| |||| || ||||| |||||||||||| |||| ||||  ||||||  |||||||||  || ||||||| ||| | ||| | |||||||||| ||    
T  17118711 acttgtgctcacccttgtcgttgtgaatccatgagatcggctcgcaatttttgtttggaggatgaagtcattcagtttttgactcgcttgaatgatactt 17118810  T
Q  514 ttggagttgt 523  Q
    ||| ||||||    
T  17118811 ttgaagttgt 17118820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 404
Target Start/End: Original strand, 17127986 - 17128219
Alignment:
Q  171 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 270  Q
    ||||| ||||||||| | | ||||||| | ||||| || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  17127986 cattcctggattctgaactatgtttctgcacaaattgcgcaaaccattgtttttcatgaatacgccattgatgtctggattgagcttcaagaactcttct 17128085  T
Q  271 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 370  Q
    ||||||||||||||||  | ||| || |  | ||| || | ||||||||| | |||||||| || ||   ||||||||| ||||||||  || |||| ||    
T  17128086 ctaaggttgatagagttcgtattgctactcttcgttctacaatcaacaatcttaaacaaggtactaagactgtgcttgattacttcacatagatgaagtc 17128185  T
Q  371 gctttgggaagagcttaattttcatcgtcctatg 404  Q
     |||||||| ||||| ||||  ||||| ||||||    
T  17128186 tctttgggaggagctcaattcacatcgccctatg 17128219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 514
Target Start/End: Complemental strand, 19806199 - 19805856
Alignment:
Q  171 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 270  Q
    |||||||||||| || | |  |||||||| ||||| || |||||||  || ||||||||||||||||||||||| ||||||||||||||| || | ||||    
T  19806199 cattcttggattttgaactcagtttctccacaaattgcgcaaaccactgtttttcatgaatacgccattgatgtttggattgagcttcaaaaatgttttt 19806100  T
Q  271 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 370  Q
    | |||||| | |||||    ||| || |  | | | || | ||||||||| |  ||||||| || || | | | ||||| |||||||| ||| |||||||    
T  19806099 caaaggttcacagagttcatattgctactcttcattctacaatcaacaatctttaacaaggtactaagtctattcttgattacttcacagagatgaaatc 19806000  T
Q  371 gctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttg 470  Q
     |||||||| ||||| ||||  ||||| |||||| ||  ||| ||||||||  |||| ||||||||||| ||  ||||  | ||| || | |||||  ||    
T  19805999 tctttgggaggagctcaattcacatcgccctatgcctgcatgcacttgtccctatccatgtcgctgtgagtctgtgcgtgctgctaaagaatttcacatg 19805900  T
Q  471 gaggaccaaatcattcaatttctcactagtttgaatgataattt 514  Q
    || ||  || | ||||||||||||||||| ||||||||||||||    
T  19805899 gaagattaagtgattcaatttctcactagattgaatgataattt 19805856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 16985044 - 16985096
Alignment:
Q  191 tgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatg 243  Q
    |||||| |||||||| ||||||||  |||| ||||||||| ||||||||||||    
T  16985044 tgtttcacctcaaattgctcaaactctcgtttttcatgaaaacgccattgatg 16985096  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 173 - 448
Target Start/End: Original strand, 13129009 - 13129284
Alignment:
Q  173 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 272  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||  | ||||| || ||||||    
T  13129009 ttcttggattattaattctgtttctcctcaaattgctcaaactattgtattccatgaatacgccattgatgtctggattgaattacaagagcgtttttct 13129108  T
Q  273 aaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagt-tgaaatcg 371  Q
    ||||||||| |  |  |  || ||||| ||||| || | || |||||||||||||||||    || | ||| ||||| ||||||||  ||| | |||||     
T  13129109 aaggttgatcgtattcgtgttgcttcactacgttcttccattaacaatttgaaacaaggtgataaatctgttcttgattacttcac-aagtataaaatct 13129207  T
Q  372 ctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 448  Q
    |||||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  13129208 ctttgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 13129284  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 28015657 - 28015767
Alignment:
Q  174 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 273  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||||| || |||||||    
T  28015657 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcaagagcgtttttcta 28015756  T
Q  274 aggttgataga 284  Q
    | |||||||||    
T  28015757 aagttgataga 28015767  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 20485533 - 20485423
Alignment:
Q  174 tcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttcta 273  Q
    ||||||||| || ||| ||||||||  ||||| || ||||| || || |||||||||| |||||||||||| ||||||||||||||  | || |||||||    
T  20485533 tcttggattttgaattctgtttctctgcaaattgcacaaacaattgtttttcatgaattcgccattgatgtttggattgagcttcagaagcgtttttcta 20485434  T
Q  274 aggttgataga 284  Q
    | |||||||||    
T  20485433 aagttgataga 20485423  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 192 - 448
Target Start/End: Original strand, 55308395 - 55308651
Alignment:
Q  192 gtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttctaaggttgatagagtcagaa 291  Q
    |||||||||||||| |||||||| || || |||||||||| |||||||||||| ||||||||  | ||||| || ||||||||||||||| |  |  |      
T  55308395 gtttctcctcaaattgctcaaactattgtctttcatgaatccgccattgatgtttggattgaattgcaagagcgtttttctaaggttgatcgtattcgtg 55308494  T
Q  292 tttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattt 391  Q
    || ||||| ||||| || | || |||||| ||||||||||    || | ||| ||||| |||||||| ||| | ||||| || ||||| || |||||||     
T  55308495 ttgcttcactacgttcttccattaacaatctgaaacaaggtgataaatctgttcttgattacttcacagagatcaaatctctatgggaggaacttaattc 55308594  T
Q  392 tcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 448  Q
    ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  55308595 tcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 55308651  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 8834467 - 8834575
Alignment:
Q  173 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 272  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| || || |||||||||| |||||||||||| ||||||||  | ||||| || ||||||    
T  8834467 ttcttggattattaattatgtttctcctcaaattgctcaaactattgtctttcatgaatccgccattgatgtttggattgaattgcaagagcgtttttct 8834566  T
Q  273 aaggttgat 281  Q
    |||||||||    
T  8834567 aaggttgat 8834575  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 448
Target Start/End: Original strand, 26470317 - 26470592
Alignment:
Q  173 ttcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgcttttct 272  Q
    |||||||||| |  ||| ||||||||||||||| |||||||| ||  | |||||||||| |||||||||||| ||||||||  | ||||| || ||||||    
T  26470317 ttcttggattattaattctgtttctcctcaaattgctcaaactattatctttcatgaatccgccattgatgtctggattgaattgcaagagcgtttttct 26470416  T
Q  273 aaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgc 372  Q
    ||||||||| |  |  |  || ||||| | ||| || | || |||||| ||||||||||    || | ||| ||||| |||||||| ||| | ||||| |    
T  26470417 aaggttgatcgtattcgtgttgcttcactgcgttcttccattaacaatctgaaacaaggtgataaatctgttcttgattacttcacagagatcaaatctc 26470516  T
Q  373 tttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 448  Q
    | ||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || ||||||||||||||    
T  26470517 tatgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg 26470592  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 448
Target Start/End: Complemental strand, 16992702 - 16992425
Alignment:
Q  171 cattcttggattctggattttgtttctcctcaaatcgctcaaaccatcgtatttcatgaatacgccattgatgtatggattgagcttcaagaacgctttt 270  Q
    |||||||||||| || | | ||||||||  ||||| || ||||| || || ||||| |||| |||||||||||| |||||||||||||| || || ||||    
T  16992702 cattcttggattttgaactctgtttctctgcaaattgcacaaacaattgtttttcacgaattcgccattgatgtttggattgagcttcaggagcgttttt 16992603  T
Q  271 ctaaggttgatagagtcagaatttcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatc 370  Q
    |||| ||||||||| |  | ||  ||||  | ||  || | ||||| ||| | ||||||||  | || | ||| ||||| || ||||| ||| |||||||    
T  16992602 ctaaagttgatagaattcgtatcgcttctcttcgctcttccatcaataatctcaaacaaggtgctaaatctgtccttgactatttcacagagatgaaatc 16992503  T
Q  371 gctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg 448  Q
     |||||||| ||||| ||||  |||||||||||| |||| || |||||||| ||||| || || |||||||| |||||    
T  16992502 tctttgggaggagctcaattcacatcgtcctatgcctatgtgcacttgtccacatccatgccgttgtgaatctatgcg 16992425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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