View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_10 (Length: 338)
Name: NF18353_low_10
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 14134359 - 14134036
Alignment:
| Q |
18 |
taaacttagatgaaagggtggactcccacttaaaggaagattgttatggcaagtataagttagaagtatcacattgtatagaaaaattaatgttgagcaa |
117 |
Q |
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| T |
14134359 |
taaacttagatgaaagggtggactcccacttaaagaaagattgttatggcaagtataagttagaagtatcacattgtatagaaaaattaatgttgagcaa |
14134260 |
T |
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| Q |
118 |
tttataagtgagaggatacacaaatcgaataccttaagatttgtgatnnnnnnntatttaataacatattctctttatt--------------aaatttg |
203 |
Q |
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| T |
14134259 |
tttataagtgagaggatacacaaatcgaataccttaagatttgtgataaagaaatatttaataacatattctctttacttggttgcttatgccaaatttg |
14134160 |
T |
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| Q |
204 |
attcaaagagaaatttggacctaatagaaaattcaaacgatattctaaactcatccatgcatttatcaggttaaatgactgaacaaattaacattctaat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14134159 |
attcaaagagaaatttggacctaatagaaaattcaaacgatattctaaactcatccatgcatttatcaggttaaatgactaaacaaattaacattctaat |
14134060 |
T |
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| Q |
304 |
ttatttaatagtctttccgttcat |
327 |
Q |
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|||||||||||| ||||||||||| |
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| T |
14134059 |
ttatttaatagtttttccgttcat |
14134036 |
T |
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