View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18353_low_13 (Length: 226)

Name: NF18353_low_13
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18353_low_13
NF18353_low_13
[»] chr1 (2 HSPs)
chr1 (1-112)||(51386046-51386157)
chr1 (111-175)||(51385940-51386004)
[»] chr7 (2 HSPs)
chr7 (6-109)||(11637144-11637246)
chr7 (110-150)||(11637060-11637100)
[»] chr3 (1 HSPs)
chr3 (123-174)||(15995774-15995823)
[»] chr2 (1 HSPs)
chr2 (123-174)||(38951655-38951704)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 51386157 - 51386046
Alignment:
Q  1 aattgcaatattttagagaggggtgctttttattaaggatattgaagaaaattcaccgtaatttgaagaaagaaacttttgcaaacttatgcaatctgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51386157 aattgcaatattttagagaggggtgctttttattaaggatattgaagaaaattcaccataatttgaagaaagaaacttttgcaaacttatgcaatctgta 51386058  T
Q  101 catttctgcaat 112  Q
    ||||||||||||    
T  51386057 catttctgcaat 51386046  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 51386004 - 51385940
Alignment:
Q  111 atttgtgcctttttgtttcatcatccctcattctctttcaattttattccttatttataatcttc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386004 atttgtgcctttttgtttcatcatccctcattctctttcaattttattccttatttataatcttc 51385940  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 11637246 - 11637144
Alignment:
Q  6 caatattttagagaggggtgctttttattaaggatattgaagaaaattcaccgtaatttgaagaaagaaacttttgcaaacttatgcaatctgtacattt 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  11637246 caatattttagagaggggtgctttctattaaggatattgaagaaa-ttcaccgtcatttgaagaaagaaacttttgcaaacatatgcaatttgtacattt 11637148  T
Q  106 ctgc 109  Q
    ||||    
T  11637147 ctgc 11637144  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 11637100 - 11637060
Alignment:
Q  110 aatttgtgcctttttgtttcatcatccctcattctctttca 150  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  11637100 aatttgtacccttttgtttcatcatccctcattctctttca 11637060  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 15995823 - 15995774
Alignment:
Q  123 ttgtttcatcatccctcattctctttcaattttattccttatttataatctt 174  Q
    |||||||||||||||||||  |  |||||||||| |||||||||||||||||    
T  15995823 ttgtttcatcatccctcataat--ttcaattttaatccttatttataatctt 15995774  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 38951704 - 38951655
Alignment:
Q  123 ttgtttcatcatccctcattctctttcaattttattccttatttataatctt 174  Q
    |||||||||||||||||||  |  |||||||||| |||||||||||||||||    
T  38951704 ttgtttcatcatccctcataat--ttcaattttaatccttatttataatctt 38951655  T

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