View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_3 (Length: 497)
Name: NF18353_low_3
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Original strand, 9629502 - 9629974
Alignment:
| Q |
10 |
attatactcataaatacaacaacacttcattgaacaaataaaacaattaaagaaaccattttcagaattttgtgatcatcacacaatgtccaaccttaac |
109 |
Q |
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| T |
9629502 |
attataatcataaatacaacaacacttcattgaacaaataaaacaattaaagaaaccattttcagaattttgtgatcatcacacaatgtccaaccttaac |
9629601 |
T |
|
| Q |
110 |
catatgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaa |
209 |
Q |
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| T |
9629602 |
catatgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaa |
9629701 |
T |
|
| Q |
210 |
agtggaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttg |
309 |
Q |
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| T |
9629702 |
agtggaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttg |
9629801 |
T |
|
| Q |
310 |
tgatgattctaaaggaagtgttacaatcataaacttggcatatactggacttgaaggtactcttaatcacttaaatttgtcggtttttcctaaccttgtt |
409 |
Q |
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| T |
9629802 |
tgatgattctaaaggaagtgttacaatcataaacttggcatatactggacttgaaggtactcttaatcacttaaatttgtcggtttttcctaaccttgtt |
9629901 |
T |
|
| Q |
410 |
cgtcttgatcttaaaacaaacaatctcaccggtgttatacctgaaaacatcggcgttctttcgaaacttcaat |
482 |
Q |
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| T |
9629902 |
cgtcttgatcttaaaacaaacaatctcaccggtgttatacctgaaaacatcggtgttctttcgaaacttcaat |
9629974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Complemental strand, 13607744 - 13607272
Alignment:
| Q |
10 |
attatactcataaatacaacaacacttcattgaacaaataaaacaattaaagaaaccattttcagaattttgtgatcatcacacaatgtccaaccttaac |
109 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607744 |
attataatcataaatacaacaacacttcattgaacaaataaaacaattaaagaaaccattttcagaattttgtgatcatcacacaatgtccaaccttaac |
13607645 |
T |
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| Q |
110 |
catatgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaa |
209 |
Q |
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| T |
13607644 |
catatgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaa |
13607545 |
T |
|
| Q |
210 |
agtggaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttg |
309 |
Q |
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| T |
13607544 |
agtggaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttg |
13607445 |
T |
|
| Q |
310 |
tgatgattctaaaggaagtgttacaatcataaacttggcatatactggacttgaaggtactcttaatcacttaaatttgtcggtttttcctaaccttgtt |
409 |
Q |
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| T |
13607444 |
tgatgattctaaaggaagtgttacaatcataaacttggcatttactggacttgaaggtactcttaatcacttaaatttgtctgtttttcctaaccttttt |
13607345 |
T |
|
| Q |
410 |
cgtcttgatcttaaaacaaacaatctcaccggtgttatacctgaaaacatcggcgttctttcgaaacttcaat |
482 |
Q |
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| T |
13607344 |
cgtcttgatcttaaatcaaacaatctcaccggtgttatacctgaaaacatcggtgttctttcgaaacttcaat |
13607272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 34 - 482
Target Start/End: Original strand, 13902279 - 13902733
Alignment:
| Q |
34 |
cttcattgaacaaataaaacaattaaagaaaccattttcagaattttgtgatcatcacacaatgtccaaccttaaccata------tgcatacatttcca |
127 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| ||||||| || |||||| |||| || |||||||||||||||||||||| |||||||||||||| |
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| T |
13902279 |
cttcattgaataaataaagcaattgaagaagtcattttctgagttttgtaatcaccaaacaatgtccaaccttaaccataatcatatgcatacatttcca |
13902378 |
T |
|
| Q |
128 |
attcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtggaaacaaagtctcc |
227 |
Q |
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| T |
13902379 |
attcaagctactgtattggtttctttgttgctagctctatgccaaatcacttcagggctgacacaatttgaagccttgttaaagtggaaacaaagtctcc |
13902478 |
T |
|
| Q |
228 |
ctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttgtgatgattctaaaggaag |
327 |
Q |
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| T |
13902479 |
ctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttgtgatgattctaaaggaag |
13902578 |
T |
|
| Q |
328 |
tgttacaatcataaacttggcatatactggacttgaaggtactcttaatcacttaaatttgtcggtttttcctaaccttgttcgtcttgatcttaaaaca |
427 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||| ||| || |
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| T |
13902579 |
tgttacaatcataaacttggcatttactggacttgaaggtactcttaatcacttaaacttgtcagtttttccaaaccttcttcgtcttgatctcaaagca |
13902678 |
T |
|
| Q |
428 |
aacaatctcaccggtgttatacctgaaaacatcggcgttctttcgaaacttcaat |
482 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |
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|
| T |
13902679 |
aacaatctcaccggtgtcatacctgaaaacatcggtgttctttcaaaactccaat |
13902733 |
T |
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