View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_5 (Length: 425)
Name: NF18353_low_5
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 43144470 - 43144077
Alignment:
| Q |
13 |
tcatcagatttgacactaattgtatggaatgatgctctatatcatatttggtaggtcatttccgtttataatcaattttgtgtgcttaacaaactctacg |
112 |
Q |
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| T |
43144470 |
tcatcagatttgacactaattgtatggaatgatgctctatatcatatttggtaggtcatttccgtttgtaatcaattttgtgtgcttaacaaactctacg |
43144371 |
T |
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| Q |
113 |
agatacttatatgaaagcttttaaaaatgtgaatacacaaaactagagatagttctcataagggtatttttcctgggcgctttatgtagagatagatggc |
212 |
Q |
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| T |
43144370 |
agatacttatatgaaagcttttaaaaatgtgaatacacaaaactagagatagttctcataagggtatttttcctgggcgctttatgtagagatagatggc |
43144271 |
T |
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| Q |
213 |
ttagctactagattttggttgacttgactccaagcccctcctatgttctatccaacaatacataggatttaaagcacaaaattaatttaaaaatgttatg |
312 |
Q |
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| T |
43144270 |
ttagctactagattttggttgacttgactccaagcccctcctatgttctatccaacaatacataggatttaaagcacaaaattaattttaaaatgttatg |
43144171 |
T |
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| Q |
313 |
taaacaagaaatttgacattaaattgtgtagtgcgtcaagcaggaagctcaattggtaaaagtcctatgcacacatttgatatggagggcacgg |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144170 |
taaacaagaaatttcacattaaattgtgtagtgcgtcaagcaggaagctcaattggtaaaagtcctatgcacacatttgatatggagggcacgg |
43144077 |
T |
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