View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_6 (Length: 423)
Name: NF18353_low_6
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 26 - 407
Target Start/End: Original strand, 45874098 - 45874479
Alignment:
| Q |
26 |
ttcaatttttgttcctctcattagttaacttttagcttctcaatccagatcaagataatataacaagtgattgaaagtaacatgaaaattacaaaaggag |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45874098 |
ttcaatttttgttcctctcattagttaacttttagcttctcaatccagatcaagataatataacaagtgattgaaagtaacatgaaaattacaaaaggag |
45874197 |
T |
|
| Q |
126 |
gaggaaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaac |
225 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45874198 |
gaggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaac |
45874297 |
T |
|
| Q |
226 |
ccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcag |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45874298 |
ccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcag |
45874397 |
T |
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| Q |
326 |
tgatgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaag |
407 |
Q |
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| T |
45874398 |
tgatgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaag |
45874479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 130 - 399
Target Start/End: Original strand, 22263633 - 22263902
Alignment:
| Q |
130 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
229 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22263633 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22263732 |
T |
|
| Q |
230 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
329 |
Q |
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|||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
22263733 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22263832 |
T |
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| Q |
330 |
gaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatg |
399 |
Q |
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| T |
22263833 |
gaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatg |
22263902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 130 - 399
Target Start/End: Complemental strand, 22270207 - 22269938
Alignment:
| Q |
130 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
229 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22270207 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22270108 |
T |
|
| Q |
230 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
329 |
Q |
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|||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
22270107 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22270008 |
T |
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| Q |
330 |
gaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatg |
399 |
Q |
| |
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|||||| ||| ||||||| || | ||| |||||||||| |||||| ||||||||||||| |||| ||||| |
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| T |
22270007 |
gaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatg |
22269938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 135 - 408
Target Start/End: Original strand, 10082840 - 10083113
Alignment:
| Q |
135 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
234 |
Q |
| |
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|||||| || || ||||| |||| ||| ||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
10082840 |
tacctgaccggtgtttccgttgacaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaa |
10082939 |
T |
|
| Q |
235 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
334 |
Q |
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|| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |
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| T |
10082940 |
atctgcttagaccacttcttcaaagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaat |
10083039 |
T |
|
| Q |
335 |
taagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagt |
408 |
Q |
| |
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| ||| | |||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||||||||||||| |
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|
| T |
10083040 |
tcagtgtattatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagt |
10083113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 338
Target Start/End: Original strand, 41245605 - 41245808
Alignment:
| Q |
135 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
234 |
Q |
| |
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|||||||||| ||| ||||| | ||||||||| |||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| || | |
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| T |
41245605 |
tacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcaga |
41245704 |
T |
|
| Q |
235 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
334 |
Q |
| |
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|| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| |
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| T |
41245705 |
atctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaat |
41245804 |
T |
|
| Q |
335 |
taag |
338 |
Q |
| |
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|||| |
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|
| T |
41245805 |
taag |
41245808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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