View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_7 (Length: 419)
Name: NF18353_low_7
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 49273310 - 49272973
Alignment:
| Q |
19 |
cctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatattttcaggtgacactt-cttttactaaacaaaccatgatcacatattaatt |
117 |
Q |
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| T |
49273310 |
cctgaagtgttgcataagaaaatagagcaggaatcatgcccataacatattttcaggtgacactttcttttactaaacaaaccatgatcacatattaatt |
49273211 |
T |
|
| Q |
118 |
gtgatgcaccaagtctaagtcttttttacggcctgacatgtatctagacacttttttgctttatgttggccatttttaactctcctctctcaataaaaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49273210 |
gtgatgcaccaagtctaagtcttttttacggcctgacatgtatctagacacttttttgctttatgttggccatttttaactctcctctctcaataaatga |
49273111 |
T |
|
| Q |
218 |
ttacaattgtatcgatcattcagcaaagaaaattacagtagaggnnnnnnngataaaccgaggtacctaaatattcagagaagttacaaattcaataaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49273110 |
ttacaattgtatcgatcattcagcaaagaaaattacagtagaggaaaaaaagataaaccgaggtacctaaatattcagagaagttacaaattcaataaaa |
49273011 |
T |
|
| Q |
318 |
agtccaaaaatttgatccgataaatatttagtatcaag |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49273010 |
agtccaaaaatttgatccgataaatatttagtatcaag |
49272973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 49274071 - 49274122
Alignment:
| Q |
19 |
cctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatattt |
70 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
49274071 |
cctgaagtgttgcataagcaaatagagcaggaatcatgcacatagcatattt |
49274122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 49268286 - 49268244
Alignment:
| Q |
19 |
cctgaagtgttgcataagaaaatagagcaggaatcatgcacat |
61 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
49268286 |
cctgaagcgttgcataagcaaatagagcaggaatcatgcacat |
49268244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 49255562 - 49255509
Alignment:
| Q |
19 |
cctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatattttc |
72 |
Q |
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||||||| |||||||||| ||| ||||||||||||||||||||| || |||||| |
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| T |
49255562 |
cctgaagagttgcataagcaaaaagagcaggaatcatgcacatagcaaattttc |
49255509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 49272950 - 49272917
Alignment:
| Q |
378 |
cattttacattctcacttggctcaaattcatctc |
411 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49272950 |
cattttacattctcacttggctcaaattcatctc |
49272917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 29356801 - 29356756
Alignment:
| Q |
27 |
gttgcataagaaaatagagcaggaatcatgcacataacatattttc |
72 |
Q |
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|||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
29356801 |
gttgcataagcaaatagagcaggaatcatgcacatagcaaattttc |
29356756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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