View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18353_low_8 (Length: 419)
Name: NF18353_low_8
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 184 - 413
Target Start/End: Original strand, 5283561 - 5283788
Alignment:
| Q |
184 |
aaaagagggtcttcaaagacatgcggggtgtttcccaccaaactccaacatggtcaagtcatggacaaagcagtcatccagccagccattgtatgtatat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283561 |
aaaagagggtcttcaaagacatgcggggtgtttcccaccaaactccaacatggtcaagtcatggacaaagcagtcatccagccagccattgtatgtat-- |
5283658 |
T |
|
| Q |
284 |
tattcgttggtcaaacacgtgatgttatgttcagctaccctccaatatgcactcaactctcttcatataaaaaccatctcacccgaaatatctttgcacc |
383 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5283659 |
tattcgttggtcaaacacgtgatattatgttcagctaccctccaatatgcactctactctcttcatataaaaaccatctcaccccaaatatctttgcacc |
5283758 |
T |
|
| Q |
384 |
acaacactcttcaaccctttcctttgctac |
413 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
5283759 |
acaacactcttcaaccctttcctttactac |
5283788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 5283369 - 5283544
Alignment:
| Q |
19 |
aaatgagtattttccatgtattattaagaaagttactgatttcagaaaagcaattttctca-gacatactttccaaagaaggtttttcacctttggcggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283369 |
aaatgagtattttccatgtattattaagaa-gttattgatttcagaaaagcaattttctcacgacatactttccaaagaaggtttttcacctttggcggt |
5283467 |
T |
|
| Q |
118 |
ccaattaaactaataatgcgatagtagacaattggtttatgaaaagaattgacaaaagggttggacaaaagagggtcttca |
198 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283468 |
cctattaaac---taatgcgatagtagacaattggtttatg-aaagaattgacaaaagggttggacaaaagagggtcttca |
5283544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 5301647 - 5301796
Alignment:
| Q |
131 |
taatgcgatagtagacaattggtttatgaaaagaattgacaaaagggttggacaaaagagggtcttcaaagacatgcggggtgtttcccaccaaactcca |
230 |
Q |
| |
|
||||| |||| | ||||||| |||||||||| ||| ||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5301647 |
taatgagatatttgacaattagtttatgaaa-gaaatgaaaaaagggttggacaaaagaggatcttcaaagacacgcggggtatttcccaccaaactcca |
5301745 |
T |
|
| Q |
231 |
acatggtcaagtcatggacaaagcagtcatccagccagccattgtatgtat |
281 |
Q |
| |
|
||| |||||||| ||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
5301746 |
acagggtcaagtaatggacaaagcagccagccagccagccattatatgtat |
5301796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 293 - 413
Target Start/End: Complemental strand, 5290462 - 5290342
Alignment:
| Q |
293 |
gtcaaacacgtgatgttatgttcagctaccctccaatatgcactcaactctcttcatataaaaaccatctcacccgaaatatctttgcaccacaacactc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||| || | ||||||||||||| | |
|
|
| T |
5290462 |
gtcaaacacgtgatgttatgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttctgcaccacaacacac |
5290363 |
T |
|
| Q |
393 |
ttcaaccctttcctttgctac |
413 |
Q |
| |
|
||||||||||| |||| |||| |
|
|
| T |
5290362 |
ttcaacccttttcttttctac |
5290342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 5301870 - 5301973
Alignment:
| Q |
310 |
atgttcagctaccctccaatatgcactcaactctcttcatataaaaaccatctcacccgaaatatctttgcaccacaacactcttcaaccctttcctttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||| || | ||||||||||||| |||||||||||| |||| |
|
|
| T |
5301870 |
atgttcagctaccctccaatatgcacactactctcttcatataaaaaccatctcatcccaaacatttctgcaccacaacacacttcaacccttttctttt |
5301969 |
T |
|
| Q |
410 |
ctac |
413 |
Q |
| |
|
|||| |
|
|
| T |
5301970 |
ctac |
5301973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 5309386 - 5309453
Alignment:
| Q |
189 |
agggtcttcaaagacatgcggggtgtttcccaccaaactccaacatggtcaagtcatggacaaagcag |
256 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
5309386 |
agggtcatcaaagacatgctgggcatttcccaccaaactccaacagggtcaagtcatggacaacgcag |
5309453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 5290607 - 5290534
Alignment:
| Q |
193 |
tcttcaaagacatgcggggtgtttcccaccaaactccaacatggtcaagtcatggacaaagcagtcatccagcca |
267 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||| |||||||| ||||||||||||| || ||||||| |
|
|
| T |
5290607 |
tcttcaaagaaatgcggggtatttcccaccaaacaccaacagggtcaagt-atggacaaagcagccagccagcca |
5290534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 5309520 - 5309620
Alignment:
| Q |
310 |
atgttcagctaccctccaatatgcactcaactctcttcatataaaaaccatctcacccgaaatatctttgcaccacaacactcttcaaccctttcctttg |
409 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| ||||||||| || | ||||| ||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
5309520 |
atgttcagctaccctctaat--gcactctactctcaacatataaaa-ccttatcaccacaaacatatttgcaccacaacactcttcaaccctttccttta |
5309616 |
T |
|
| Q |
410 |
ctac |
413 |
Q |
| |
|
|||| |
|
|
| T |
5309617 |
ctac |
5309620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 5314151 - 5314220
Alignment:
| Q |
159 |
aaaagaattgacaaaagggttggacaaaagagggtcttcaaagacatgcggggtgtttcccaccaaactc |
228 |
Q |
| |
|
|||| |||||| |||| |||| ||| || ||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
5314151 |
aaaataattgaaaaaatggttagaccaaggagggtcttcaaagacatgcggggtatctcccacctaactc |
5314220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 5314358 - 5314401
Alignment:
| Q |
346 |
tcatataaaaaccatctcacccgaaatatctttgcaccacaacac |
390 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
5314358 |
tcatataaaaaccatctcaccc-aaacatctttgcaccacaacac |
5314401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 1504197 - 1504260
Alignment:
| Q |
345 |
ttcatataaaaaccatctcacccgaaatatctttgcaccacaacactcttcaaccctttccttt |
408 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1504197 |
ttcatataaaaaccatctcactctaaacatctttccaccacaacactcttcacccctttccttt |
1504260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University