View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18353_low_9 (Length: 416)
Name: NF18353_low_9
Description: NF18353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18353_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 4307603 - 4308006
Alignment:
| Q |
1 |
gaatcatccttcccaactcacccaacctctctgatttgcttctattgacacagttgagatattaattttcttcacgctactctccagctcaacgcagttg |
100 |
Q |
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|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4307603 |
gaatcatcctccccaactcacccaccatctctgatttgcttctattgacacagttgagataataattttcttcacgctactctccagctcaacgcagttg |
4307702 |
T |
|
| Q |
101 |
taatttaatgcttgaaaagttaggttggtcgtttgtttgtttaattcaaaataaaggaatttattgcagacaatgttgagatgttgaacttacgggctaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307703 |
taatttaatgctcgaaaagttaggttggtcgtttgtttgtttaattcaaaataaaggaatttattgcagacaatgttgagatgttgaacttacgggctaa |
4307802 |
T |
|
| Q |
201 |
cgtttcagtcacagctaggtttccaactgtgatatttccaacaccaacattgatgtatttctttcaaaaccactttgcgcgatatttatttagcaagttt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307803 |
cgtttcagtcacagttaggtttccaactgtgatatttccaacaccaacattgatgtatttctttcaaaaccactttgcgcgatatttatttagcaagttt |
4307902 |
T |
|
| Q |
301 |
tttcttttgtcatggaatggtttgttgcagtaaaaaggagcataagagagaatgtaatcattgtgttgtattgaaaatggagaaacattactaaaattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307903 |
tttcttttgtcatggaatggtttgttgcagtaaaaaggagcataagagagaatgtaatcattgtgttgtattgaaaatggagaaacattactaaaattga |
4308002 |
T |
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| Q |
401 |
gtat |
404 |
Q |
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|||| |
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| T |
4308003 |
gtat |
4308006 |
T |
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