View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18354_high_1 (Length: 1096)

Name: NF18354_high_1
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18354_high_1
NF18354_high_1
[»] chr2 (7 HSPs)
chr2 (885-1077)||(18929696-18929887)
chr2 (169-358)||(17403898-17404087)
chr2 (881-1061)||(17403198-17403377)
chr2 (978-1079)||(26651299-26651400)
chr2 (16-138)||(24545313-24545436)
chr2 (41-151)||(17404166-17404276)
chr2 (913-1033)||(25519999-25520118)
[»] chr3 (9 HSPs)
chr3 (880-1058)||(9033046-9033225)
chr3 (881-1064)||(4770126-4770307)
chr3 (910-1059)||(4765286-4765434)
chr3 (978-1058)||(15687340-15687420)
chr3 (979-1086)||(24698727-24698834)
chr3 (980-1073)||(16242605-16242699)
chr3 (978-1075)||(29614037-29614135)
chr3 (991-1058)||(4832190-4832258)
chr3 (978-1061)||(13428406-13428488)
[»] chr6 (6 HSPs)
chr6 (881-1086)||(17525241-17525444)
chr6 (911-1039)||(31125745-31125872)
chr6 (884-1058)||(22394009-22394179)
chr6 (978-1062)||(16177672-16177759)
chr6 (1019-1075)||(1176918-1176974)
chr6 (989-1075)||(32784447-32784534)
[»] chr5 (12 HSPs)
chr5 (908-1075)||(20064063-20064227)
chr5 (977-1075)||(25951685-25951783)
chr5 (978-1075)||(20058300-20058397)
chr5 (977-1075)||(21165557-21165655)
chr5 (975-1075)||(23209772-23209872)
chr5 (289-356)||(24879513-24879580)
chr5 (978-1071)||(20061232-20061323)
chr5 (978-1022)||(19217727-19217771)
chr5 (951-1059)||(24878782-24878889)
chr5 (947-1022)||(17987914-17987988)
chr5 (1024-1075)||(20713596-20713647)
chr5 (947-1057)||(22011479-22011588)
[»] chr4 (2 HSPs)
chr4 (977-1086)||(11362051-11362160)
chr4 (944-1022)||(10071001-10071078)
[»] chr8 (4 HSPs)
chr8 (977-1086)||(23539981-23540090)
chr8 (866-1076)||(28371496-28371705)
chr8 (980-1058)||(10662109-10662187)
chr8 (881-1058)||(16600980-16601159)
[»] chr7 (6 HSPs)
chr7 (965-1058)||(2545771-2545864)
chr7 (980-1086)||(14986744-14986846)
chr7 (980-1086)||(15416355-15416457)
chr7 (978-1075)||(4173104-4173201)
chr7 (977-1086)||(20146262-20146371)
chr7 (976-1012)||(2563197-2563233)
[»] chr1 (4 HSPs)
chr1 (866-1059)||(22619579-22619770)
chr1 (978-1086)||(11013493-11013601)
chr1 (981-1086)||(20146581-20146686)
chr1 (977-1059)||(17615684-17615766)
[»] scaffold0002 (1 HSPs)
scaffold0002 (881-1034)||(373696-373847)
[»] scaffold0795 (1 HSPs)
scaffold0795 (978-1086)||(5725-5833)
[»] scaffold0555 (1 HSPs)
scaffold0555 (985-1065)||(5337-5417)
[»] scaffold0161 (1 HSPs)
scaffold0161 (985-1086)||(5287-5388)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 3e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 885 - 1077
Target Start/End: Complemental strand, 18929887 - 18929696
Alignment:
Q  885 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 984  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  985 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1077  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttc 18929696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 169 - 358
Target Start/End: Complemental strand, 17404087 - 17403898
Alignment:
Q  169 atcatttggctcattaaggacatattgagcgaatcatgtgagaagactataggtttgtgaccttcgcggccaggaaagtcgtcctcaaccttttcagggt 268  Q
    ||||| |||||||| || ||||| ||||||||| ||||||| | |||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  17404087 atcatgtggctcatgaaagacatgttgagcgaagcatgtgaaaggactctaggtttgcgaccttcgctgccaggaaagtcttcctcaaccttttcagggt 17403988  T
Q  269 ctaatttggaatatgcaaagggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatcttgg 358  Q
     ||||||||||| ||   | |||||||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17403987 gtaatttggaatctgggtaaggccctataaaggcgtaaacagtaccagagacagagtatggaatgagtacctgagatttctaaatcttgg 17403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 881 - 1061
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  881 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 980  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  981 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 1061  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 978 - 1079
Target Start/End: Complemental strand, 26651400 - 26651299
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1077  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  1078 aa 1079  Q
    ||    
T  26651300 aa 26651299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 24545436 - 24545313
Alignment:
Q  16 acatgccacatttgagtt-caagtttttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaaccccgtcttagaaag 114  Q
    ||||||||||||| |||| || | | |||||| ||||||| |||||||||||  ||||||||||||  | ||||||||||||||||||||||||||| ||    
T  24545436 acatgccacatttaagttgcatggtattggtaaaactttcctagaaatgcatcacagccaatatcaactgctcatcatactctaaccccgtcttagagag 24545337  T
Q  115 ttaaataaggttgaaaatccctaa 138  Q
     | ||||||||| || ||||||||    
T  24545336 ctgaataaggttaaagatccctaa 24545313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 17404276 - 17404166
Alignment:
Q  41 ttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaaccccgtcttagaaagttaaataaggttgaaaatccctaatt 140  Q
    ||||| ||||||||  |||||| ||| ||||||| ||||| |||||||||||| ||||||  ||||||||||||||  || |||||||| || |||||||    
T  17404276 ttggtggaactttcccagaaatacatcgcagccagtatcaagttctcatcatattctaacatcgtcttagaaagttggatgaggttgaagattcctaatt 17404177  T
Q  141 ttctccaaata 151  Q
    |||| ||||||    
T  17404176 ttctacaaata 17404166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 913 - 1033
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  913 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 1012  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  1013 ggtcaacattggttgattttt 1033  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 2e-52; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 880 - 1058
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  880 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 977  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1058  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 881 - 1064
Target Start/End: Complemental strand, 4770307 - 4770126
Alignment:
Q  881 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 980  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  981 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaa 1064  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||    
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaa 4770126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 910 - 1059
Target Start/End: Original strand, 4765286 - 4765434
Alignment:
Q  910 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 1009  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  1010 tgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 1059  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttc 4765434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 978 - 1058
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1058  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 979 - 1086
Target Start/End: Original strand, 24698727 - 24698834
Alignment:
Q  979 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 1078  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  1079 aagagatg 1086  Q
    | ||||||    
T  24698827 acgagatg 24698834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 980 - 1073
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  980 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 1073  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 978 - 1075
Target Start/End: Original strand, 29614037 - 29614135
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtt 1075  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | ||||||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggagtt 29614135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 991 - 1058
Target Start/End: Original strand, 4832190 - 4832258
Alignment:
Q  991 tttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 1058  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||   |||||||||| ||||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttt 4832258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 978 - 1061
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 1061  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 6e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 881 - 1086
Target Start/End: Complemental strand, 17525444 - 17525241
Alignment:
Q  881 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 980  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  981 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 1080  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  1081 gagatg 1086  Q
    ||||||    
T  17525246 gagatg 17525241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 911 - 1039
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  911 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 1010  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  1011 gtggtcaacattggttgatttttactctt 1039  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 884 - 1058
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  884 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 983  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  984 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1058  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 978 - 1062
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  978 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 1062  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1019 - 1075
Target Start/End: Original strand, 1176918 - 1176974
Alignment:
Q  1019 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| |||||||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggagtt 1176974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 989 - 1075
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  989 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 1075  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 6e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 908 - 1075
Target Start/End: Original strand, 20064063 - 20064227
Alignment:
Q  908 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 1007  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  1008 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt 20064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 977 - 1075
Target Start/End: Complemental strand, 25951783 - 25951685
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  |||||||||||||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggagtt 25951685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 978 - 1075
Target Start/End: Original strand, 20058300 - 20058397
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt 20058397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 977 - 1075
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 975 - 1075
Target Start/End: Original strand, 23209772 - 23209872
Alignment:
Q  975 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 1074  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| |||||||||    
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggagt 23209871  T
Q  1075 t 1075  Q
    |    
T  23209872 t 23209872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 24879580 - 24879513
Alignment:
Q  289 ggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatctt 356  Q
    |||||||| |||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24879580 ggccctagaaaggtgtaaacagtaccagagacagagtatggaatgagtacctgagatttccaaatctt 24879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 978 - 1071
Target Start/End: Complemental strand, 20061323 - 20061232
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaagg 1071  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| |||||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaagg 20061232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 978 - 1022
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1022  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 951 - 1059
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  951 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 1050  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  1051 agtcttttc 1059  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 947 - 1022
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  947 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1022  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1024 - 1075
Target Start/End: Complemental strand, 20713647 - 20713596
Alignment:
Q  1024 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggagtt 20713596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 947 - 1057
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  947 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 1044  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  1045 aattgaagtcttt 1057  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 9e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 977 - 1086
Target Start/End: Complemental strand, 11362160 - 11362051
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1076  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  1077 caaagagatg 1086  Q
    ||| ||||||    
T  11362060 caacgagatg 11362051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 944 - 1022
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  944 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1022  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 977 - 1086
Target Start/End: Original strand, 23539981 - 23540090
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1076  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  1077 caaagagatg 1086  Q
    | | ||||||    
T  23540081 cgacgagatg 23540090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 866 - 1076
Target Start/End: Complemental strand, 28371705 - 28371496
Alignment:
Q  866 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 965  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t 28371607  T
Q  966 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 1065  Q
    | || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371606 ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  1066 caaaggagttt 1076  Q
     ||||||||||    
T  28371506 taaaggagttt 28371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 980 - 1058
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  980 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1058  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 881 - 1058
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  881 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 977  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 1058  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 965 - 1058
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  965 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1058  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 980 - 1086
Target Start/End: Original strand, 14986744 - 14986846
Alignment:
Q  980 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca 1078  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||  ||||  |||||| |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  1079 aagagatg 1086  Q
    | ||||||    
T  14986839 acgagatg 14986846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 980 - 1086
Target Start/End: Original strand, 15416355 - 15416457
Alignment:
Q  980 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca 1078  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||  ||||  |||||| |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  1079 aagagatg 1086  Q
    | ||||||    
T  15416450 acgagatg 15416457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 978 - 1075
Target Start/End: Original strand, 4173104 - 4173201
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1075  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| |||||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagagtt 4173201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 977 - 1086
Target Start/End: Complemental strand, 20146371 - 20146262
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1076  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  1077 caaagagatg 1086  Q
    ||| ||||||    
T  20146271 caacgagatg 20146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 976 - 1012
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  976 tttgttagctggtattttcaccagcctcatttaatgt 1012  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 866 - 1059
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  866 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 965  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  966 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 1059  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 978 - 1086
Target Start/End: Original strand, 11013493 - 11013601
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1077  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  1078 aaagagatg 1086  Q
     | ||||||    
T  11013593 gacgagatg 11013601  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 981 - 1086
Target Start/End: Complemental strand, 20146686 - 20146581
Alignment:
Q  981 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 1080  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  1081 gagatg 1086  Q
    ||||||    
T  20146586 gagatg 20146581  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 977 - 1059
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  977 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 1059  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

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Target: scaffold0002 (Bit Score: 58; Significance: 8e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 881 - 1034
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  881 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 980  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  981 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 1034  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

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Target: scaffold0795 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 978 - 1086
Target Start/End: Original strand, 5725 - 5833
Alignment:
Q  978 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1077  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  1078 aaagagatg 1086  Q
    || ||||||    
T  5825 aacgagatg 5833  T

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Target: scaffold0555 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 985 - 1065
Target Start/End: Original strand, 5337 - 5417
Alignment:
Q  985 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 1065  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaat 5417  T

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Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 985 - 1086
Target Start/End: Complemental strand, 5388 - 5287
Alignment:
Q  985 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 1083  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  1084 atg 1086  Q
    |||    
T  5289 atg 5287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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