View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_11 (Length: 313)
Name: NF18354_high_11
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 28179542 - 28179262
Alignment:
| Q |
13 |
tgaatgtccgtcatgctactttacggctttaatacatggattccaaattctataagatgtgatatcattatcaaagacacatacatgtaatctccacatt |
112 |
Q |
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| T |
28179542 |
tgaatatccgtcatgctactttacggctttaatacatggattccaaattctatagg---tgataccattatcaaagacacacacatgtaatctccacatt |
28179446 |
T |
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| Q |
113 |
gatccattcatttcttcgaagtgcattgtgtggtacaaaattgaatcgcatgttctccagactccagttcagttgaagatcatgaagatacgtattatcc |
212 |
Q |
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| T |
28179445 |
gatccattcatttcttcgaagtgcattgtgtggtacaaaattgaatcgcatgttctccagactccagttcagttgaagatcatg----tacgtattatcc |
28179350 |
T |
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| Q |
213 |
gattctatgccaatattactagggagtgcttgtaata-atcaatttaataatatagaagacaactgtaaaagggagcttgttacaaag |
299 |
Q |
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| T |
28179349 |
ggttctaccccaatattactagggagtgcttgtaatacatcaatttaataatatagaaaacaactataaaagggagcctgttacaaag |
28179262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 28154975 - 28154818
Alignment:
| Q |
13 |
tgaatgtccgtcatgctactttacggctttaatacatggattccaaattctataagatgtgatatcattatcaaagacacatacatgtaatctccacatt |
112 |
Q |
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||||| |||| ||||||||||| | |||||||||||||||||||||| ||| ||| ||| | |||| ||||||| || | ||||||||||| |||| |
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| T |
28154975 |
tgaatatccgccatgctacttttctgctttaatacatggattccaaaatctgtaacgagtgttgtcatcatcaaag--acctgcatgtaatctctacatg |
28154878 |
T |
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| Q |
113 |
gatccattcatttcttcgaagtgcattgtgtggtacaaaattgaatcgcatgttctccag |
172 |
Q |
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| T |
28154877 |
gatccattcatttttcagaagtgcattgtgcagtatagaattgaaccgcatatcctccag |
28154818 |
T |
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