View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_13 (Length: 271)
Name: NF18354_high_13
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 6781756 - 6781520
Alignment:
| Q |
18 |
ttattgactttgtgtttcctattttaattttgcagttgagattgatatgacaatgggaaaacctgaagaattttccaatgattttcctgacatcttgtct |
117 |
Q |
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| T |
6781756 |
ttattgactttgtgtttcctgttttacttttgcagtggagattgatatgacaatgggaaaacctgaagaattttccaattattttcctgacatcttgtct |
6781657 |
T |
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| Q |
118 |
tgtatagacttctctgatctctttagtgaatgtcaatcacagaagttagataatcttgctcatggtatcaacaacaaaagacggaaaatggagtctggtt |
217 |
Q |
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| T |
6781656 |
tgtatagacttctctgatttcttcagtgaatgtcaatcacagatgttagatattcttgctcatgatatcaacaacaaaagacggaaaacggagtctggtt |
6781557 |
T |
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| Q |
218 |
gtgatgtctctattcaacataaagatgttattattat |
254 |
Q |
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| T |
6781556 |
gtgatgtctctattcaacataaagatgttattattat |
6781520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 6666461 - 6666601
Alignment:
| Q |
123 |
agacttctctgatctctttagtgaatgtcaatcacagaagttagata---------atcttgctcatggtatcaacaacaaaagacggaaaatggagtct |
213 |
Q |
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| T |
6666461 |
agacttcagtgatttcttcagtgaatgtcaatcacagaagttagatattaaggttaatcttgctcatgatatcagcaacaaaagacggaaaatggagtct |
6666560 |
T |
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| Q |
214 |
ggttgtgatgtctctattcaacataaagatgttattattat |
254 |
Q |
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| T |
6666561 |
ggttgtgatgtctctattcaacataaggatgttattattat |
6666601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6666387 - 6666448
Alignment:
| Q |
19 |
tattgactttgtgtttcctattttaattttgcagttgagattgatatgacaatgggaaaacc |
80 |
Q |
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| T |
6666387 |
tattgactttgtgtttcctgttttacttttgcagttgagattgatatgacaatgggaaaacc |
6666448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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