View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18354_high_14 (Length: 263)

Name: NF18354_high_14
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18354_high_14
NF18354_high_14
[»] chr1 (4 HSPs)
chr1 (29-208)||(29555228-29555407)
chr1 (205-263)||(29555464-29555522)
chr1 (40-72)||(48710364-48710396)
chr1 (31-96)||(14791401-14791466)
[»] chr5 (4 HSPs)
chr5 (40-131)||(17173351-17173442)
chr5 (31-83)||(19338009-19338061)
chr5 (40-72)||(27515882-27515914)
chr5 (40-72)||(22113960-22113992)
[»] chr6 (1 HSPs)
chr6 (31-96)||(12414289-12414354)
[»] chr8 (1 HSPs)
chr8 (44-120)||(18182653-18182729)
[»] chr4 (3 HSPs)
chr4 (31-78)||(25913318-25913365)
chr4 (52-130)||(1072656-1072734)
chr4 (40-72)||(10349446-10349478)
[»] chr3 (2 HSPs)
chr3 (40-98)||(36280836-36280894)
chr3 (43-87)||(21396969-21397013)
[»] chr7 (1 HSPs)
chr7 (48-92)||(35889509-35889553)
[»] chr2 (1 HSPs)
chr2 (40-68)||(43408415-43408443)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 29555228 - 29555407
Alignment:
Q  29 atcaactccctctcccacgcaaataacctcctacgccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgtcgccaact 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555228 atcaactccctctcccacgcaaataacctcctacaccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgtcgccaact 29555327  T
Q  129 taatataagccagctcaaataacctatggaacctaacctcccacgactcaccatccaaccaaggatctttccaaaacaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29555328 taatataagccagctcaaataacctatggaacctaacctccaacgactcaccatccaaccaaggatctttccaaaacaac 29555407  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 29555464 - 29555522
Alignment:
Q  205 caacataccaacatcgtctctaatattatttaccgtcttccaccacaccgaccctctcc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555464 caacataccaacatcgtctctaatattatttaccgtcttccaccacaccgaccctctcc 29555522  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 48710364 - 48710396
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttcca 72  Q
    |||||||||||||||||||||||||||||||||    
T  48710364 ctcccacgcaaataacctcctacgccacttcca 48710396  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 14791401 - 14791466
Alignment:
Q  31 caactccctctcccacgcaaataacctcctacgccacttccaagcctcgccattcacatcccaccc 96  Q
    ||||||| |||||||||||||||||||    ||||||||||||| ||| ||||| ||| |||||||    
T  14791401 caactccttctcccacgcaaataacctatggcgccacttccaagtctcaccattgacaccccaccc 14791466  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 17173442 - 17173351
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgtcgccaacttaa 131  Q
    |||||||| |||||||| ||| ||||||||| ||||||| |||||||| ||||||| ||||| |||||||||||| ||| || |||||||||    
T  17173442 ctcccacgaaaataaccgcctccgccacttctaagcctcaccattcacttcccaccacaaagaaaacatctccgctaccatcaccaacttaa 17173351  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 19338009 - 19338061
Alignment:
Q  31 caactccctctcccacgcaaataacctcctacgccacttccaagcctcgccat 83  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||    
T  19338009 caactccttctcccacgcaaataatctcctacgccacttccacgcctctccat 19338061  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 27515882 - 27515914
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttcca 72  Q
    |||||||||||||||||||||||||||||||||    
T  27515882 ctcccacgcaaataacctcctacgccacttcca 27515914  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 22113992 - 22113960
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttcca 72  Q
    ||||||| |||||||||||||||||||||||||    
T  22113992 ctcccacacaaataacctcctacgccacttcca 22113960  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 12414289 - 12414354
Alignment:
Q  31 caactccctctcccacgcaaataacctcctacgccacttccaagcctcgccattcacatcccaccc 96  Q
    |||||||  ||||||| |||||||||||| |||| ||||||||||||| ||||| ||| |||||||    
T  12414289 caactccacctcccacacaaataacctccgacgcaacttccaagcctcaccattgacaacccaccc 12414354  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 18182653 - 18182729
Alignment:
Q  44 cacgcaaataacctcctacgccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgt 120  Q
    ||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||  ||   |||||||||| |||||||    
T  18182653 cacgcaaataacctcctccgccacttccacgcctctccatccacctcccaccttaacaaaaacatctcctccaccgt 18182729  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 25913365 - 25913318
Alignment:
Q  31 caactccctctcccacgcaaataacctcctacgccacttccaagcctc 78  Q
    |||||||  |||||||||||||||||||||| |||||||||| |||||    
T  25913365 caactcctcctcccacgcaaataacctcctatgccacttccacgcctc 25913318  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 1072734 - 1072656
Alignment:
Q  52 taacctcctacgccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgtcgccaactta 130  Q
    |||||||||||| ||||| || ||||| ||||||||| ||||||||| || |||||| ||| ||||  || ||||||||    
T  1072734 taacctcctacgacacttgcacgcctcaccattcacaccccaccccatagaaaacatatcctccacaatcaccaactta 1072656  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10349478 - 10349446
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttcca 72  Q
    |||||||||||||||||||||||| ||||||||    
T  10349478 ctcccacgcaaataacctcctacgacacttcca 10349446  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 36280836 - 36280894
Alignment:
Q  40 ctcccacgcaaataacctcctacgccacttccaagcctcgccattcacatcccacccca 98  Q
    |||||| ||||||||||||||||||||||||||  |||| || |||||  |||||||||    
T  36280836 ctcccaagcaaataacctcctacgccacttccactcctcaccgttcactccccacccca 36280894  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 21396969 - 21397013
Alignment:
Q  43 ccacgcaaataacctcctacgccacttccaagcctcgccattcac 87  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||||    
T  21396969 ccacacaaacaacctcctacgccatttccaagcctcaccattcac 21397013  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 35889553 - 35889509
Alignment:
Q  48 caaataacctcctacgccacttccaagcctcgccattcacatccc 92  Q
    |||| ||||||| |||||||||||| ||||| |||||||||||||    
T  35889553 caaacaacctccgacgccacttccacgcctcaccattcacatccc 35889509  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 43408443 - 43408415
Alignment:
Q  40 ctcccacgcaaataacctcctacgccact 68  Q
    |||||||||||||||||||||||||||||    
T  43408443 ctcccacgcaaataacctcctacgccact 43408415  T

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