View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_19 (Length: 244)
Name: NF18354_high_19
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 15375801 - 15375591
Alignment:
| Q |
18 |
atacaaaaccaaatcaaatagtaccaacatcttccacacaattaatatataaattttttagacgaagcacacatgtaatcaaacataagaaatttctcgt |
117 |
Q |
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| T |
15375801 |
atacaaaaccaaatcaaataataccaacatcttccacacaattagtatataaattttttagacgaaggacacatgtaatcaaacataagaaatttcttgt |
15375702 |
T |
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| Q |
118 |
ttcatcaaaagacgaatagaccattttcattattcaataaaataggacacattagaataatgagacaacttcaaattctcatttagtttgaagtagtcat |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15375701 |
ttaatcaaaagacgaatagaccattttcattattcaataaaataggacacattggaataatgagacaacttcaaattctcatttagtttgaagtagtcat |
15375602 |
T |
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| Q |
218 |
tactcactaat |
228 |
Q |
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||||||||||| |
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| T |
15375601 |
tactcactaat |
15375591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 15348950 - 15348843
Alignment:
| Q |
121 |
atcaaaagacgaatagaccattttcattattcaataaaataggacacattagaataatgagacaacttcaaattctcatttagtttgaagtagtcattac |
220 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |
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| T |
15348950 |
atcaaacgacgaatagaccattttcaatattcaataaaataggacacattagaataatgagacaactccaaattctcaattagtttgaggtagtcattac |
15348851 |
T |
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| Q |
221 |
tcactaat |
228 |
Q |
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|||||||| |
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| T |
15348850 |
tcactaat |
15348843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 15318070 - 15317992
Alignment:
| Q |
150 |
ttcaataaaataggacacattagaataatgagacaacttcaaattctcatttagtttgaagtagtcattactcactaat |
228 |
Q |
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| T |
15318070 |
ttcaataaaataggacacattagaataatgagacaactccaaattctcagttagtttgaggtagtcattactcactaat |
15317992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 15368711 - 15368633
Alignment:
| Q |
150 |
ttcaataaaataggacacattagaataatgagacaacttcaaattctcatttagtttgaagtagtcattactcactaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||| |
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| T |
15368711 |
ttcaataaaataggacacattagaataatgagacaactccaaattctcagttagtttaaggtagtcattactcactaat |
15368633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 15382014 - 15381970
Alignment:
| Q |
100 |
acataagaaatttctcgtttcatcaaaagacgaatagaccatttt |
144 |
Q |
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|||| |||||||| | |||| |||||||||||||||||||||||| |
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| T |
15382014 |
acattagaaattttttgtttaatcaaaagacgaatagaccatttt |
15381970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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