View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_5 (Length: 542)
Name: NF18354_high_5
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 51363172 - 51363546
Alignment:
| Q |
20 |
tatgacacacaagaaactattaggtcggatnnnnnnntatttatttctattggaaaagattgttaggcctttggttgcagtgggcatatgcagttgcact |
119 |
Q |
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| T |
51363172 |
tatgacacgcgagaaactattaggtcggataaaaaaatatttatttctattggtaaagattgttaggcctttggttgcagtgggcatatgcagttgcact |
51363271 |
T |
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| Q |
120 |
acctatggactcgtttctttttaatgttatctttgggctttccaacaaaatttcgcgcgtaataaaactataaactgctt----cttccaaagtattaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
51363272 |
acctatggactcgtttctttttaatgttatctttgggctttccaacaaaatttcgcgcgtaataaaactataaaatgcttcttccttccaaagtattaat |
51363371 |
T |
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| Q |
216 |
ctgctaatattatattacagttatctaactaaccattccattcaaatttcaatgcctaggatttacctctgctcatgttaaagtgtatttcatgg--nnn |
313 |
Q |
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| T |
51363372 |
ctgctaatattatattacagttatctaactaaccattccattcaaatttcaatgcctaggatttacctctgctcatgttaaagtgtatttcatggttttt |
51363471 |
T |
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| Q |
314 |
nnnngttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51363472 |
ttttgttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
51363546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 434 - 537
Target Start/End: Original strand, 51363555 - 51363659
Alignment:
| Q |
434 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttataatcatctaacaaattactatattcaatctgcta-atcttgggtttacctttg |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | | |||||||||||||||||| |
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| T |
51363555 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttacaatcatctaacaaattactatattcaaatttcaacatcttgggtttacctttg |
51363654 |
T |
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| Q |
533 |
cttct |
537 |
Q |
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|||| |
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| T |
51363655 |
tttct |
51363659 |
T |
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