View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_6 (Length: 410)
Name: NF18354_high_6
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 31114484 - 31114667
Alignment:
| Q |
3 |
cttcctagacgagatggttacccacattctgtcttttctcccaatcaaataagcttt-agaaccaatgtccattcaaagaggtggatcccattatgccac |
101 |
Q |
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| T |
31114484 |
cttcctagacgagatggttacccacattctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccac |
31114583 |
T |
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| Q |
102 |
tcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggac |
185 |
Q |
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| T |
31114584 |
tcactctccattatctgcattgatgatagaagcttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 253 - 395
Target Start/End: Original strand, 31114681 - 31114820
Alignment:
| Q |
253 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccattccatttggcacctacgtaccaccaccatttcctactggaa |
352 |
Q |
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| T |
31114681 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccattccatttggcacctacgt---accaccatttcctactgcaa |
31114777 |
T |
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| Q |
353 |
tacacttttggttttgagactgatgaatatacatgtagtagct |
395 |
Q |
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| T |
31114778 |
tacacttttggttttgagactgatgaatatacatgtagtagct |
31114820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 31088499 - 31088611
Alignment:
| Q |
100 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggacgcaattatgttcaa |
199 |
Q |
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| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
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| Q |
200 |
cccccactctcaa |
212 |
Q |
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| T |
31088599 |
cccacactctcaa |
31088611 |
T |
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