View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_high_8 (Length: 388)
Name: NF18354_high_8
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 3220857 - 3221226
Alignment:
| Q |
16 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggtgc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
3220857 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttcttggcttggtcctcttgaagaaaatgaaacaacagaaggagc |
3220956 |
T |
|
| Q |
116 |
gagggaatcaccaattactgttcctttgaataacaatgttgctgatggattgtaggttgattttatgtattctttgattgttaaaccagctgcgtaactc |
215 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220957 |
taaagaatcaccaattactgttcctttgaatatcaatgttgctgatggattgtaagttgattttatgtattctttgattgttaaaccagctgcgtaactc |
3221056 |
T |
|
| Q |
216 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221057 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
3221156 |
T |
|
| Q |
316 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3221157 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaccactacttttccacttagatcaat |
3221226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 3231090 - 3231456
Alignment:
| Q |
16 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggtgc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
3231090 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaatgaaacaacagaaggagc |
3231189 |
T |
|
| Q |
116 |
gagggaatcaccaattactgttcctttgaataacaatgttgctgatggattgtaggttgattttatgtattctttgattgttaaaccagctgcgtaactc |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
3231190 |
taaagaatcaccaattactgttcctttgaatatcaatgttgctgttggattgtaggttgagtttatgtaatctttgattgttaaaccagctttgtaactc |
3231289 |
T |
|
| Q |
216 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
315 |
Q |
| |
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| || ||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || ||||| |||||||||| ||||| |
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| T |
3231290 |
acttcaaccgcaggtagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacaccacctgaatttaaaactt |
3231389 |
T |
|
| Q |
316 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatc |
382 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3231390 |
cttgtcctttcacagtgcttggaacacgtcctccgatatcacacaacactacttttccacttagatc |
3231456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 3225842 - 3226208
Alignment:
| Q |
16 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggtgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3225842 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggagc |
3225941 |
T |
|
| Q |
116 |
gagggaatcaccaattactgttcctttgaataacaatgttgctgatggattgtaggttgattttatgtattctttgattgttaaaccagctgcgtaactc |
215 |
Q |
| |
|
| ||||||||||||| |||||||| |||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
3225942 |
taaagaatcaccaattatcgttcctttaaatatcaatgttgctgtcggattgtatgttgattttatgtaagatttgattgttaaaccagctgcataactc |
3226041 |
T |
|
| Q |
216 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
315 |
Q |
| |
|
| || ||| ||||||| |||||||||| ||||| |||| ||||||||||||| ||||||||||||||| ||||| || | ||| |||||||||||||||| |
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|
| T |
3226042 |
acttcaactgcaggtagaacatgagcaatagcaaaagtactgaaaccaagtgcttctgaatttgcaagtatcattgctataccacctgaatttagaactt |
3226141 |
T |
|
| Q |
316 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaat |
385 |
Q |
| |
|
||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||| |||| |||||| |
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|
| T |
3226142 |
cttgtcctttcacaatacttgagacatttcct---acatcacacagcactacttttccgcttaaatcaat |
3226208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 3239889 - 3240261
Alignment:
| Q |
16 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggtgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
3239889 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaacagaaggagc |
3239988 |
T |
|
| Q |
116 |
gagggaatcaccaattactgttcctttgaataacaatgttgctgatggattgtaggttgattttatgtattctttgattgttaaaccagctgcgtaactc |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |
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|
| T |
3239989 |
taaagaatcaccaattactgttcctttgaataacaatgttgctgttggattgtaggttgagttaatgtaatctttgattgttaaaccagctgcataactc |
3240088 |
T |
|
| Q |
216 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
315 |
Q |
| |
|
| || ||| || || | |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || ||||| || ||||||||||| |
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| T |
3240089 |
acttcaactgctggcagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacaccatttgcatttagaactt |
3240188 |
T |
|
| Q |
316 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatatt |
388 |
Q |
| |
|
||||||||||||||| ||||||||| | | || | |||||||||||| ||||||||||||||||||||||| |
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|
| T |
3240189 |
cttgtcctttcacaaaggttgaaacatcttcacctatatcacacaacacaacttttccacttagatcaatatt |
3240261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 3178951 - 3178579
Alignment:
| Q |
16 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaaacaacagaaggtgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
3178951 |
cagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaacagaaggagc |
3178852 |
T |
|
| Q |
116 |
gagggaatcaccaattactgttcctttgaataacaatgttgctgatggattgtaggttgattttatgtattctttgattgttaaaccagctgcgtaactc |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3178851 |
taaagaatcaccaattactgttcctttgaataacaatgttgctgttggattgtaggttgagttaatgtaatctttgattgttaaaccagctgcataactt |
3178752 |
T |
|
| Q |
216 |
agttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacaccgcctgaatttagaactt |
315 |
Q |
| |
|
| || ||| || || | |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || ||||| || ||||||||||| |
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|
| T |
3178751 |
acttcaactgctggcagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacaccatttgcatttagaactt |
3178652 |
T |
|
| Q |
316 |
cttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatatt |
388 |
Q |
| |
|
||||||||||||||| ||||||||| | | || | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3178651 |
cttgtcctttcacaaaggttgaaacatcttcacctatatcacacaacacaacttttccacttagatcaatatt |
3178579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 3215939 - 3216022
Alignment:
| Q |
18 |
gctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaa |
101 |
Q |
| |
|
||||||||||| || || || ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |
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|
| T |
3215939 |
gctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaagtaa |
3216022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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