View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18354_low_12 (Length: 355)

Name: NF18354_low_12
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18354_low_12
NF18354_low_12
[»] chr3 (6 HSPs)
chr3 (7-338)||(35394682-35395013)
chr3 (117-156)||(1395611-1395650)
chr3 (117-156)||(2128342-2128381)
chr3 (121-156)||(2304336-2304371)
chr3 (117-166)||(905061-905110)
chr3 (119-156)||(32703078-32703115)
[»] chr5 (13 HSPs)
chr5 (117-165)||(11054117-11054165)
chr5 (117-166)||(37063165-37063214)
chr5 (117-165)||(4014515-4014563)
chr5 (117-165)||(12425502-12425550)
chr5 (117-156)||(7096218-7096257)
chr5 (117-156)||(8481158-8481197)
chr5 (117-156)||(12407752-12407791)
chr5 (117-156)||(35960354-35960393)
chr5 (121-166)||(706393-706438)
chr5 (119-156)||(13224369-13224406)
chr5 (117-145)||(1943202-1943230)
chr5 (117-165)||(5963373-5963421)
chr5 (120-156)||(12460094-12460130)
[»] chr8 (9 HSPs)
chr8 (117-156)||(4558738-4558777)
chr8 (117-155)||(1470947-1470985)
chr8 (117-165)||(26215427-26215475)
chr8 (117-157)||(39392752-39392792)
chr8 (117-156)||(14482142-14482181)
chr8 (117-156)||(42597341-42597380)
chr8 (118-156)||(3936789-3936827)
chr8 (117-154)||(31315544-31315581)
chr8 (117-157)||(36643962-36644002)
[»] chr7 (10 HSPs)
chr7 (117-156)||(15328546-15328585)
chr7 (116-156)||(48157210-48157250)
chr7 (119-153)||(2767271-2767305)
chr7 (117-155)||(28178910-28178948)
chr7 (117-154)||(3802230-3802267)
chr7 (118-155)||(24975845-24975882)
chr7 (117-166)||(35536037-35536086)
chr7 (117-154)||(43152993-43153030)
chr7 (122-166)||(2013129-2013173)
chr7 (120-156)||(33894563-33894599)
[»] chr6 (5 HSPs)
chr6 (117-156)||(2514642-2514681)
chr6 (117-155)||(781326-781364)
chr6 (100-165)||(10616780-10616846)
chr6 (119-155)||(7354145-7354181)
chr6 (117-145)||(10749319-10749347)
[»] chr2 (7 HSPs)
chr2 (117-156)||(42457888-42457927)
chr2 (117-156)||(25609736-25609775)
chr2 (117-156)||(37033984-37034023)
chr2 (118-156)||(5133712-5133750)
chr2 (119-165)||(9833086-9833132)
chr2 (120-156)||(10150695-10150731)
chr2 (120-156)||(32837251-32837287)
[»] chr1 (8 HSPs)
chr1 (119-156)||(37591372-37591409)
chr1 (120-156)||(1725205-1725241)
chr1 (117-156)||(50319232-50319271)
chr1 (119-156)||(23895276-23895313)
chr1 (117-146)||(44251368-44251397)
chr1 (117-165)||(172668-172716)
chr1 (117-165)||(4549797-4549845)
chr1 (117-145)||(45234148-45234176)
[»] chr4 (8 HSPs)
chr4 (116-156)||(6364089-6364129)
chr4 (117-165)||(9680595-9680643)
chr4 (117-156)||(51044550-51044589)
chr4 (117-154)||(19691349-19691386)
chr4 (117-154)||(19701934-19701971)
chr4 (120-152)||(1404366-1404398)
chr4 (116-156)||(20907113-20907153)
chr4 (117-153)||(30770826-30770862)
[»] scaffold0590 (1 HSPs)
scaffold0590 (117-156)||(1165-1204)
[»] scaffold0275 (1 HSPs)
scaffold0275 (117-156)||(2771-2810)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 35394682 - 35395013
Alignment:
Q  7 tggccggtttgggttaacttatttgagctgacataaattttatcagactgtttgggagaacttatagaaactacttttcataagttctcaaagatagttt 106  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35394682 tggccggtttggattaacttatttgagctgacataaattttatgagactgtttgggagaacttatagaaactacttttcataagttctcgaagatagttt 35394781  T
Q  107 atacgaaaacactttattttatcttttattatagaaatagattatacataggcgtttataagtgtctctacaataaactgaaaatgttgtttatccaaac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  35394782 atacgaaaacactttattttatcttttattatagaaatagattatacataagcgtttatcagtgtctgtgcaataaactgaaaatgttgtttatccaaac 35394881  T
Q  207 ctggcctaannnnnnnctactcttatttttatgcttcctcttcctcatttatcttgttcactatgatatattagatacttgaaggaggacaagcctcatg 306  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35394882 ctggcctaatttttttctactcttatttttatgcttcctcttcctcatttatcttgttcactatgatatattagatacttgaaggaggacaagcctcatg 35394981  T
Q  307 gttctgccggtggtctttataacttcaaagat 338  Q
    ||||||||||||||||||||||||||||||||    
T  35394982 gttctgccggtggtctttataacttcaaagat 35395013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 1395650 - 1395611
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  1395650 actttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 2128342 - 2128381
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  2128342 actttattttatcttttgttatagaaatagcttatacata 2128381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 2304336 - 2304371
Alignment:
Q  121 tattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||||||||||| |||||||||    
T  2304336 tattttatcttttattatagaaatagcttatacata 2304371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 905061 - 905110
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttata 166  Q
    ||||||||||||||||| |||||||||||| |||||| || ||| |||||    
T  905061 actttattttatcttttgttatagaaatagcttatacttaagcgcttata 905110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 32703115 - 32703078
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  32703115 tttattttatcttttataatagaaatagcttatacata 32703078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 11054165 - 11054117
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataagcgtttat 11054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 37063165 - 37063214
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttata 166  Q
    ||||||||||||||||| |||||||||||| ||||||||| || ||||||    
T  37063165 actttattttatcttttgttatagaaatagtttatacataagcatttata 37063214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 4014515 - 4014563
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||||||||||||||||  ||||||||||| ||||||||||||| ||||    
T  4014515 actttattttatcttttgctatagaaatagcttatacataggcgcttat 4014563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 12425550 - 12425502
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||||||    
T  12425550 actttattttatcttttactatataaatagtttatacataagcgtttat 12425502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 7096218 - 7096257
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  7096218 actttattttatcttttgttatagaaatagcttatacata 7096257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 8481197 - 8481158
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  8481197 actttattttatcttttattatataaataaattatacata 8481158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 12407752 - 12407791
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  12407752 actttattttatcttttgttatagaaatagcttatacata 12407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 35960393 - 35960354
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  35960393 actttattttatcttttattatagaaatagtttatgcata 35960354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 706438 - 706393
Alignment:
Q  121 tattttatcttttattatagaaatagattatacataggcgtttata 166  Q
    |||||||||||||| ||||||||||| ||||||||| ||| |||||    
T  706438 tattttatcttttactatagaaatagcttatacataagcgcttata 706393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 13224406 - 13224369
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacata 13224369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 1943230 - 1943202
Alignment:
Q  117 actttattttatcttttattatagaaata 145  Q
    |||||||||||||||||||||||||||||    
T  1943230 actttattttatcttttattatagaaata 1943202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 5963373 - 5963421
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||||||||||||||| ||||||||||||| || |||||| ||| ||||    
T  5963373 actttattttatctttcattatagaaatagtttgtacataagcgcttat 5963421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 12460094 - 12460130
Alignment:
Q  120 ttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||| |||||||||||| |||||||||    
T  12460094 ttattttatcttttgttatagaaatagcttatacata 12460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 4558777 - 4558738
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  4558777 actttattttatcttttattatagaaatagcttatacata 4558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 1470947 - 1470985
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacat 155  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  1470947 actttattttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 26215475 - 26215427
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||| ||||    
T  26215475 actttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 39392752 - 39392792
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacatag 157  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  39392752 actttattttatcttttgttatagaaatagtttatacatag 39392792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 14482181 - 14482142
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  14482181 actttattttatcttttgttatagaaatagtttatacata 14482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 42597380 - 42597341
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  42597380 actttattttatcttttgttatagaaatagcttatacata 42597341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 3936827 - 3936789
Alignment:
Q  118 ctttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  3936827 ctttattttatcctttgttatagaaatagattatacata 3936789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 31315544 - 31315581
Alignment:
Q  117 actttattttatcttttattatagaaatagattataca 154  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  31315544 actttattttatcttttattataaaaatagcttataca 31315581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 36643962 - 36644002
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacatag 157  Q
    |||||| | ||||||||||||||||||||| ||||||||||    
T  36643962 actttactgtatcttttattatagaaatagcttatacatag 36644002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 15328585 - 15328546
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  15328585 actttattttatcttttattatagaaatagattatgcata 15328546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 48157210 - 48157250
Alignment:
Q  116 cactttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  48157210 cactttattttatcttttattatagaaataagttatacata 48157250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 2767271 - 2767305
Alignment:
Q  119 tttattttatcttttattatagaaatagattatac 153  Q
    ||||||||||||||| |||||||||||||||||||    
T  2767271 tttattttatcttttgttatagaaatagattatac 2767305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 28178948 - 28178910
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacat 155  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  28178948 actttattttatcttttgttatagaaatagcttatacat 28178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 3802230 - 3802267
Alignment:
Q  117 actttattttatcttttattatagaaatagattataca 154  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  3802230 actttattttaccttttattatagaaatagcttataca 3802267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 24975882 - 24975845
Alignment:
Q  118 ctttattttatcttttattatagaaatagattatacat 155  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  24975882 ctttattttatcttttgttatagaagtagattatacat 24975845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 35536086 - 35536037
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttata 166  Q
    ||||||||||||||| | |||||||||||| ||||||||| || ||||||    
T  35536086 actttattttatcttatgttatagaaatagcttatacataagcctttata 35536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 43152993 - 43153030
Alignment:
Q  117 actttattttatcttttattatagaaatagattataca 154  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  43152993 actttattttatcttttgttatagaaatagcttataca 43153030  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 2013173 - 2013129
Alignment:
Q  122 attttatcttttattatagaaatagattatacataggcgtttata 166  Q
    |||||||||||| ||||||||||| |||||||||| || ||||||    
T  2013173 attttatcttttgttatagaaataaattatacataagcatttata 2013129  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 33894599 - 33894563
Alignment:
Q  120 ttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||| |||||||||||| |||||||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacata 33894563  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 2514681 - 2514642
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacata 2514642  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 781364 - 781326
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacat 155  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  781364 actttattttatcttttattatagaaatagcttatacat 781326  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 10616780 - 10616846
Alignment:
Q  100 atagtttatacgaaaaca-ctttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||| ||||||||||| | ||| ||||||||||||| |||| |||||||||||||||| || |||||    
T  10616780 atagcttatacgaaaataacttcattttatcttttactataaaaatagattatacataagcttttat 10616846  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 7354181 - 7354145
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacat 155  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  7354181 tttattttatcttttgttatagaaatagtttatacat 7354145  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 10749319 - 10749347
Alignment:
Q  117 actttattttatcttttattatagaaata 145  Q
    |||||||||||||||||||||||||||||    
T  10749319 actttattttatcttttattatagaaata 10749347  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 42457927 - 42457888
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  42457927 actttattttatcttttactatagaaatagattatacata 42457888  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 25609775 - 25609736
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  25609775 actttattttatcttttcttatagaaatagcttatacata 25609736  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 37034023 - 37033984
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  37034023 actttattttatctttttttatagaaatagtttatacata 37033984  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 5133750 - 5133712
Alignment:
Q  118 ctttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  5133750 ctttattttatcttttgttatagaaatagcttatacata 5133712  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 9833132 - 9833086
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    ||||||||||||||| |||| ||||||||||||||||| | ||||||    
T  9833132 tttattttatcttttgttatggaaatagattatacataagtgtttat 9833086  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 10150731 - 10150695
Alignment:
Q  120 ttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||||||||||||  |||||||||    
T  10150731 ttattttatcttttattatagaaataacttatacata 10150695  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 32837287 - 32837251
Alignment:
Q  120 ttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  32837287 ttattttatcttttgttatagaaatagattatgcata 32837251  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 37591409 - 37591372
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37591409 tttattttatcttttattatagaaatagtttatacata 37591372  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 1725205 - 1725241
Alignment:
Q  120 ttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1725205 ttattttatcttttattatagaaatagtttatacata 1725241  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 50319271 - 50319232
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  50319271 actttattttatcttttgttatagaaatagcttatacata 50319232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 23895313 - 23895276
Alignment:
Q  119 tttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  23895313 tttattttatcttttgttatagaaatagcttatacata 23895276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 44251397 - 44251368
Alignment:
Q  117 actttattttatcttttattatagaaatag 146  Q
    ||||||||||||||||||||||||||||||    
T  44251397 actttattttatcttttattatagaaatag 44251368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 172668 - 172716
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    ||||||| ||||||||| |||||||||||| ||||||||| | ||||||    
T  172668 actttatgttatcttttgttatagaaatagcttatacataagagtttat 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 4549845 - 4549797
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    ||||||||||||||||| |||||||||||| || |||||| || |||||    
T  4549845 actttattttatcttttgttatagaaatagcttgtacataagcatttat 4549797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 45234176 - 45234148
Alignment:
Q  117 actttattttatcttttattatagaaata 145  Q
    |||||||||||||||||||||||||||||    
T  45234176 actttattttatcttttattatagaaata 45234148  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 6364129 - 6364089
Alignment:
Q  116 cactttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  6364129 cactttattttatcttttgttatagaaatagcttatacata 6364089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 9680643 - 9680595
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacataggcgtttat 165  Q
    |||||||||||||||||||||| ||||||| ||||||||| || |||||    
T  9680643 actttattttatcttttattatcgaaatagcttatacataagcatttat 9680595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 51044550 - 51044589
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  51044550 actttattttatcttttgttatagaaatagcttatacata 51044589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 19691386 - 19691349
Alignment:
Q  117 actttattttatcttttattatagaaatagattataca 154  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  19691386 actttattttaacttttattatagaaatagcttataca 19691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 19701971 - 19701934
Alignment:
Q  117 actttattttatcttttattatagaaatagattataca 154  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  19701971 actttattttaacttttattatagaaatagcttataca 19701934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 1404398 - 1404366
Alignment:
Q  120 ttattttatcttttattatagaaatagattata 152  Q
    ||||||||||||||||||||||||||| |||||    
T  1404398 ttattttatcttttattatagaaatagcttata 1404366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 20907153 - 20907113
Alignment:
Q  116 cactttattttatcttttattatagaaatagattatacata 156  Q
    |||||||||||||||||| ||||| |||||| |||||||||    
T  20907153 cactttattttatcttttcttatacaaatagcttatacata 20907113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 30770862 - 30770826
Alignment:
Q  117 actttattttatcttttattatagaaatagattatac 153  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  30770862 actttattttatcttttattataaaaatagtttatac 30770826  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 1165 - 1204
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  1165 actttattttatcttttgttatagaaatagcttatacata 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 2810 - 2771
Alignment:
Q  117 actttattttatcttttattatagaaatagattatacata 156  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  2810 actttattttatcttttgttatagaaatagcttatacata 2771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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