View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_14 (Length: 312)
Name: NF18354_low_14
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 44306738 - 44306971
Alignment:
| Q |
3 |
tcaaacacatttgattcatgataatattccaaatacaacgaggaatgcttgtaaaagataaatacggtatgatta----attaactcacatcatgctgat |
98 |
Q |
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| T |
44306738 |
tcaaacacatttcattcatgataatattccaaatacaaggaggaatgcttgtaaaagataaatagggtatgattaattaattaactcacatcatgctgat |
44306837 |
T |
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| Q |
99 |
gggagctgcaatcgagtatcctattgcactgccataaagatacatgtactgaactattccacaaaccgtgtattggcgcccgcctgcaaattacgtttga |
198 |
Q |
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| T |
44306838 |
gggagctgcaatcgagtatcctattgcactgccataaagatacatgtactgaactattccacaaaccgtgtattggcgcccgcctgcaaattacgtttga |
44306937 |
T |
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| Q |
199 |
aactataatgttgttttagatacatgcattgcat |
232 |
Q |
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| T |
44306938 |
aactataatgttgttttagatacatgcattgcat |
44306971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 44307006 - 44307071
Alignment:
| Q |
231 |
atgttgtgacatgacattgatgttttataatactcattccgatcttaattatacaaacacattttg |
296 |
Q |
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| T |
44307006 |
atgttgtgacatgacattgatgttttataatactcattccgatcttaattatacaaacacattttg |
44307071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40210827 - 40210876
Alignment:
| Q |
10 |
catttgattcatgataatattccaaatacaacgaggaatgcttgtaaaag |
59 |
Q |
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| T |
40210827 |
catttcattcatgataatgttccaaatacaatgaggaatgtttgtaaaag |
40210876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 44324449 - 44324533
Alignment:
| Q |
79 |
ttaactcacatcatgctgatgggagctgcaatcgagtatcctattgcactgccataaagatacatgtactgaactattccacaaa |
163 |
Q |
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| T |
44324449 |
ttaactcacatcatgctcatggcagctgcaatattgtaccctattgcacttccgaaaagattcaaatactgaactatcccacaaa |
44324533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 44316447 - 44316528
Alignment:
| Q |
82 |
actcacatcatgctgatgggagctgcaatcgagtatcctattgcactgccataaagatacatgtactgaactattccacaaa |
163 |
Q |
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| T |
44316447 |
actcacatcatgctaatggcacccgcaattgtgtatcctattgcagttccgtaaagatttgtgtactgaactatcccacaaa |
44316528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 238445 - 238392
Alignment:
| Q |
6 |
aacacatttgattcatgataatattccaaatacaacgaggaatgcttgtaaaag |
59 |
Q |
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| T |
238445 |
aacacattttatttatgataatattccaaatacaatgaagaatgcttgtaaaag |
238392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 38303674 - 38303727
Alignment:
| Q |
6 |
aacacatttgattcatgataatattccaaatacaacgaggaatgcttgtaaaag |
59 |
Q |
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| T |
38303674 |
aacacattttattcatgataatatttcaaatacaatgagaaatgtttgtaaaag |
38303727 |
T |
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