View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_17 (Length: 261)
Name: NF18354_low_17
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 46527239 - 46527000
Alignment:
| Q |
18 |
ctttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcag |
117 |
Q |
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| T |
46527239 |
ctttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcag |
46527140 |
T |
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| Q |
118 |
taccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcattta |
217 |
Q |
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| T |
46527139 |
taccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcattta |
46527040 |
T |
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| Q |
218 |
aatttactgcatagtgcattacctcatctctctgctcctc |
257 |
Q |
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| T |
46527039 |
aatttactgcatagtgcattacctcatctctttgttcctc |
46527000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 3441339 - 3441248
Alignment:
| Q |
30 |
gcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtacca |
122 |
Q |
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| T |
3441339 |
gcagcaggcgaatcctaaccctaccacattggcagtatccataattgaatttaaaacatgtatggacaattcac-ttgggtgattcagtacca |
3441248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 3450472 - 3450391
Alignment:
| Q |
66 |
atccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaatttaaggct |
151 |
Q |
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| T |
3450472 |
atccataattgaatttaaaacatgtatgtacaaatcaca-tgggtgattcagtacc---aattgttagatgcctcaacttatggct |
3450391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 3576510 - 3576426
Alignment:
| Q |
64 |
gtatccagaattgaatttaaa-gcatgtat-ggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaattta |
146 |
Q |
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| T |
3576510 |
gtatccatacttgaatttaaaagcatgtataggacaagtcacattgggtgattcaataccaacaactgttagatgcctcaattta |
3576426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 3567151 - 3567103
Alignment:
| Q |
125 |
aattgttagatgcctcaatttaaggcttttgttttgcttctacagggca |
173 |
Q |
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| T |
3567151 |
aattgttagatgcctcaatttatggcttttgttttgcttccacacggca |
3567103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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