View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_18 (Length: 260)
Name: NF18354_low_18
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 4278090 - 4277856
Alignment:
| Q |
11 |
caaaggaaagagtatataccggtttccccgggcaccaatattgattataatcaaagaatgcatttgatatcttagaaaatagtattagtgtcaaaataat |
110 |
Q |
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| T |
4278090 |
caaaggaaagagtatagaccggtttccccgggcaccaatattgattataatcaaagaatgcatttgatatcttagaaaatagtattactgtcaaaataat |
4277991 |
T |
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| Q |
111 |
tttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttcttttaccggtgccatagatagaacactaatcttagttatgcatatg |
210 |
Q |
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| T |
4277990 |
tttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttcttttaccggtgccatagatagaacactaatcttagttatgcatatg |
4277891 |
T |
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| Q |
211 |
cacatgcattatgacccttaaatagtttgtaatat |
245 |
Q |
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| T |
4277890 |
cacatgcattatgacccttaaatagtttgtaatat |
4277856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 4274212 - 4274070
Alignment:
| Q |
99 |
tgtcaaaataattttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttcttttaccggtgccatagatagaacactaatctta |
198 |
Q |
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| T |
4274212 |
tgtcaaaataatttgcactacaacatatgtgaagtttatgctaatgactatgctattcgatctttcttttatcggtgccatagatagaacgttaatctta |
4274113 |
T |
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| Q |
199 |
gttatgcatatgcacatgcattatgacccttaaatagtttgta |
241 |
Q |
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| T |
4274112 |
attatgcagatgtacaagcattatgacccttaaatagtttgta |
4274070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 4284425 - 4284275
Alignment:
| Q |
69 |
tgcatttgatatcttagaaaatagtattagtgtcaaaataattttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttctttt |
168 |
Q |
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| T |
4284425 |
tgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggtaatggtgttgttattcaatctttctttt |
4284326 |
T |
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| Q |
169 |
accggtgccatagatagaacactaatcttagttatgcatatgcacatgcat |
219 |
Q |
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| T |
4284325 |
actcgtgccatggatggagtactaatctttgttatgcatatggacatgcat |
4284275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 4289576 - 4289391
Alignment:
| Q |
68 |
atgcatttgatatcttagaaaatagtattagtgtcaaaataattttcactacaacatttgtgaaatttctgttaatgacta----tgttattcaatcttt |
163 |
Q |
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| T |
4289576 |
atgcatttgttatcttaggaaataatattagtgtggaaataatttgtactacaacatttgtgaattttttgttaattaatggtgtttttattcgatcttt |
4289477 |
T |
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| Q |
164 |
cttttaccggtgccatagatagaacactaatcttagttatgcatat----gcacatgcattatgacccttaaatagtttgtaatat |
245 |
Q |
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| T |
4289476 |
cttttacccgtgccatggatgtaacactagtcttagctatgcatatacacacacattcattatgacccttaaatagtttgaaatat |
4289391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 4280107 - 4280046
Alignment:
| Q |
185 |
gaacactaatcttagtt-atgcatatgcacatgcattatgacccttaaatagtttgtaatat |
245 |
Q |
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| T |
4280107 |
gaacactaatcttagtttatacatatgcacatgcattatgacccttaaatagtttgtaatat |
4280046 |
T |
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