View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_19 (Length: 258)
Name: NF18354_low_19
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 3273513 - 3273745
Alignment:
| Q |
11 |
cacagatgctgcagacattactaggaagaaaccnnnnnnntaaccaaatgtcattccagcaacccacattgatggtgaggatggtaaaaatatggtagga |
110 |
Q |
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| T |
3273513 |
cacagatgctgcagacattactaggaagaaaccaaaaaaataaccaaatgtcattccagcaacccacattgatggtgaggatggtaaaaatatggtagga |
3273612 |
T |
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| Q |
111 |
aatagtgctatagaagcaaacacataaatagctaactccgatgtggtgaatgtgtctctctgccaaattattactggaataaacacctgaaaaataaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3273613 |
aatagtgctatagaagcaaacacataaatagctaactccgatgtggtgaatgtgtctctctgccaaattattactggaataaacacctgaaaaataaaag |
3273712 |
T |
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| Q |
211 |
ctatgttaattatcattgagataggtaattatg |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3273713 |
ctatgttaattatcattgagataggtaattatg |
3273745 |
T |
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