View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_20 (Length: 254)
Name: NF18354_low_20
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 45039123 - 45039350
Alignment:
| Q |
10 |
catcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagaggaataggagacaactact |
109 |
Q |
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| T |
45039123 |
catcatcaacagctaaccaagggtcgaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagagaaataggagacaactact |
45039222 |
T |
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| Q |
110 |
tacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctagatgaatgagtaaatttttat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039223 |
tacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctagatgaatgagtaaatttttat |
45039322 |
T |
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| Q |
210 |
atagtagttatcattggatagaagctac |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45039323 |
atagtagttatcattggatagaagctac |
45039350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 45064773 - 45064985
Alignment:
| Q |
22 |
ctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagaggaataggagacaactacttacaagtaagat |
121 |
Q |
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| T |
45064773 |
ctaaacaagggtcaaattcgaagaagcctcgaagcgcttatgagacagtaggtcacataatgtcagagaggaatatgagacaacttcttacaagtaagat |
45064872 |
T |
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| Q |
122 |
catagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctagatgaatgagtaaatttttatatagtagttatc |
221 |
Q |
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| T |
45064873 |
catataactttcgagctttataccaggattgaagaaggttagtctataacatattatattaaacctagatgaatgagtaa--ttttttatagtagttatc |
45064970 |
T |
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| Q |
222 |
attggatagaagcta |
236 |
Q |
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|||||||||| |||| |
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| T |
45064971 |
attggatagatgcta |
45064985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 45083469 - 45083328
Alignment:
| Q |
30 |
gggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagaggaataggagacaactacttacaagtaagatcatagaac |
129 |
Q |
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||||| ||||| | |||| |||||| | |||| || || |||||||||||||| |||||||||| ||||||| ||||||||| ||| ||||||||| |
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| T |
45083469 |
gggtcgaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaacttacaagaaagttcatagaac |
45083370 |
T |
|
| Q |
130 |
tttcggccttgatacctggattgaagaaggttagtatgtaat |
171 |
Q |
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|||| || || ||||||||| |||||||||||||| |||||| |
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| T |
45083369 |
tttcagcatttatacctggactgaagaaggttagtctgtaat |
45083328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 29375830 - 29376024
Alignment:
| Q |
27 |
caagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagaggaataggagacaactacttacaagtaagatcatag |
126 |
Q |
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|||||||| ||||| ||||||||| ||| | |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
29375830 |
caagggtcgaattcaaagaagcctagaagcgcttctgagacactagatcacataatgtcagagaggaataggagacagctacttacaaggaagatcatag |
29375929 |
T |
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| Q |
127 |
aactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctagatgaatgagtaaatttttatatagtagttatcat |
223 |
Q |
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||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
29375930 |
aactttcggcctttatacctggattaaagaaggtgagtttgtaatatattatattaaaccaggacaaatgagtaaatttt--tatagtagttatcat |
29376024 |
T |
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