View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_26 (Length: 212)
Name: NF18354_low_26
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7533887 - 7534017
Alignment:
| Q |
1 |
tgtacccaaacacaaatcactttacttacaattcaaaatcaattattgttacgcagaaccaaacatacactaaacattatggtttttgtaagtccaactt |
100 |
Q |
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| T |
7533887 |
tgtacccaaacacagatcactttacctacaattcaaaatcaattattgttacgcagaaccaaacatacactaaacattatggtttttgtaagtccaactt |
7533986 |
T |
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| Q |
101 |
caaagcattgttggtaaaaataatgcaagtg |
131 |
Q |
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| T |
7533987 |
caaagcattgttggtaaaaataatgcaagtg |
7534017 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 2973306 - 2973262
Alignment:
| Q |
31 |
attcaaaatcaattattgttacgcagaaccaaacatacactaaac |
75 |
Q |
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| T |
2973306 |
attcaaaatccatttttgtcacgcagaaccaaacatacactaaac |
2973262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 7632532 - 7632491
Alignment:
| Q |
33 |
tcaaaatcaattattgttacgcagaaccaaacatacactaaa |
74 |
Q |
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| T |
7632532 |
tcaaaatcaattattgccacgcagatccaaacatacactaaa |
7632491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 3134667 - 3134619
Alignment:
| Q |
33 |
tcaaaatcaattattgtta-cgcagaaccaaacatacactaaacattat |
80 |
Q |
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||||||||||||||||||| | || ||||||||||||||| |||||||| |
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| T |
3134667 |
tcaaaatcaattattgttaacacataaccaaacatacacttaacattat |
3134619 |
T |
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