View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18354_low_3 (Length: 616)

Name: NF18354_low_3
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18354_low_3
NF18354_low_3
[»] chr3 (26 HSPs)
chr3 (267-616)||(35394325-35394679)
chr3 (5-226)||(35394034-35394255)
chr3 (453-495)||(41671320-41671362)
chr3 (451-535)||(52618973-52619057)
chr3 (465-555)||(33405197-33405288)
chr3 (453-500)||(37273139-37273186)
chr3 (429-498)||(26878124-26878198)
chr3 (453-499)||(39602228-39602274)
chr3 (460-505)||(2719468-2719513)
chr3 (453-498)||(21367674-21367719)
chr3 (453-498)||(36887511-36887556)
chr3 (453-496)||(36878775-36878818)
chr3 (453-499)||(3845580-3845626)
chr3 (453-499)||(32582750-32582796)
chr3 (450-495)||(482807-482852)
chr3 (453-498)||(901931-901976)
chr3 (461-498)||(22203437-22203474)
chr3 (453-534)||(36783352-36783433)
chr3 (454-499)||(38665308-38665353)
chr3 (453-498)||(39980736-39980781)
chr3 (454-499)||(44747427-44747472)
chr3 (453-498)||(47132338-47132383)
chr3 (451-519)||(22031182-22031250)
chr3 (454-498)||(25170815-25170858)
chr3 (437-488)||(38902083-38902139)
chr3 (454-498)||(45535237-45535281)
[»] chr5 (21 HSPs)
chr5 (453-581)||(12425494-12425623)
chr5 (453-496)||(7984978-7985021)
chr5 (436-534)||(9202744-9202847)
chr5 (429-499)||(28776999-28777074)
chr5 (453-499)||(4014442-4014488)
chr5 (454-532)||(7319379-7319457)
chr5 (453-499)||(13604867-13604913)
chr5 (464-533)||(906809-906878)
chr5 (460-505)||(7319033-7319078)
chr5 (453-498)||(7674655-7674700)
chr5 (453-498)||(36318781-36318826)
chr5 (460-505)||(36639522-36639567)
chr5 (451-499)||(39105470-39105518)
chr5 (453-499)||(21768215-21768261)
chr5 (453-499)||(32197726-32197772)
chr5 (452-490)||(35445860-35445898)
chr5 (453-498)||(10272449-10272494)
chr5 (452-505)||(26516400-26516453)
chr5 (453-498)||(29925848-29925893)
chr5 (453-498)||(32703294-32703339)
chr5 (453-505)||(25461334-25461386)
[»] chr4 (24 HSPs)
chr4 (453-534)||(51630082-51630163)
chr4 (460-500)||(18011876-18011916)
chr4 (453-499)||(47800629-47800675)
chr4 (453-534)||(28300317-28300398)
chr4 (460-567)||(30338616-30338725)
chr4 (453-498)||(55414438-55414483)
chr4 (453-524)||(20907328-20907399)
chr4 (460-498)||(2111075-2111113)
chr4 (453-499)||(3155609-3155655)
chr4 (460-498)||(17822890-17822928)
chr4 (429-498)||(24169270-24169344)
chr4 (453-498)||(2996580-2996625)
chr4 (453-498)||(21731674-21731719)
chr4 (454-499)||(35571650-35571695)
chr4 (453-498)||(39691161-39691206)
chr4 (453-497)||(825508-825552)
chr4 (399-427)||(9720584-9720612)
chr4 (399-427)||(22662181-22662209)
chr4 (399-427)||(22666660-22666688)
chr4 (451-499)||(23459634-23459682)
chr4 (453-505)||(28423530-28423582)
chr4 (453-497)||(29388622-29388666)
chr4 (451-499)||(52259637-52259685)
chr4 (453-505)||(53673676-53673728)
[»] chr1 (27 HSPs)
chr1 (453-498)||(26779943-26779988)
chr1 (451-498)||(51695511-51695558)
chr1 (453-535)||(28909960-28910042)
chr1 (453-499)||(34290242-34290288)
chr1 (453-499)||(45975696-45975742)
chr1 (451-499)||(7137014-7137062)
chr1 (451-499)||(27820353-27820401)
chr1 (453-534)||(7218092-7218173)
chr1 (453-498)||(37842373-37842418)
chr1 (451-491)||(27820212-27820252)
chr1 (460-500)||(38867856-38867896)
chr1 (461-497)||(46225797-46225833)
chr1 (453-500)||(41195211-41195258)
chr1 (453-499)||(6102160-6102206)
chr1 (453-499)||(24915069-24915115)
chr1 (453-499)||(43332490-43332536)
chr1 (453-491)||(51190862-51190900)
chr1 (451-496)||(7941615-7941660)
chr1 (453-498)||(12564517-12564562)
chr1 (453-498)||(29270299-29270344)
chr1 (453-489)||(1232923-1232959)
chr1 (455-499)||(4576811-4576855)
chr1 (451-479)||(5063487-5063515)
chr1 (453-497)||(17778965-17779009)
chr1 (436-485)||(27145732-27145785)
chr1 (453-505)||(32113658-32113710)
chr1 (451-550)||(44032015-44032115)
[»] chr2 (28 HSPs)
chr2 (451-534)||(18066099-18066182)
chr2 (460-500)||(3067404-3067444)
chr2 (429-499)||(26626879-26626954)
chr2 (451-498)||(43985019-43985066)
chr2 (453-498)||(1810671-1810716)
chr2 (436-581)||(9174737-9174889)
chr2 (451-527)||(25800807-25800890)
chr2 (453-498)||(40279414-40279459)
chr2 (429-497)||(40682384-40682456)
chr2 (451-499)||(26143656-26143704)
chr2 (453-505)||(33319830-33319882)
chr2 (454-498)||(33941916-33941960)
chr2 (453-496)||(680512-680555)
chr2 (451-498)||(36863641-36863688)
chr2 (462-500)||(8017439-8017477)
chr2 (453-491)||(23956050-23956088)
chr2 (451-496)||(1056369-1056414)
chr2 (399-428)||(2416424-2416453)
chr2 (460-505)||(3611226-3611271)
chr2 (453-498)||(6988122-6988167)
chr2 (451-488)||(14364195-14364232)
chr2 (453-498)||(35379034-35379079)
chr2 (453-498)||(44590041-44590086)
chr2 (453-498)||(45229518-45229563)
chr2 (455-499)||(1742052-1742096)
chr2 (454-498)||(9477959-9478003)
chr2 (454-498)||(19629370-19629414)
chr2 (454-498)||(19826271-19826315)
[»] chr8 (13 HSPs)
chr8 (429-498)||(9956803-9956877)
chr8 (454-506)||(11494145-11494197)
chr8 (451-499)||(27028837-27028885)
chr8 (450-497)||(1433556-1433603)
chr8 (453-519)||(7714228-7714294)
chr8 (453-498)||(4762516-4762561)
chr8 (453-494)||(32131304-32131345)
chr8 (453-498)||(35749588-35749633)
chr8 (400-428)||(6525928-6525956)
chr8 (464-500)||(14905617-14905653)
chr8 (515-575)||(37353329-37353389)
chr8 (453-505)||(42370379-42370431)
chr8 (451-499)||(44236839-44236887)
[»] chr7 (16 HSPs)
chr7 (461-499)||(12110366-12110404)
chr7 (453-499)||(43648246-43648292)
chr7 (460-530)||(47177611-47177681)
chr7 (453-498)||(47130803-47130848)
chr7 (453-505)||(25596033-25596085)
chr7 (453-496)||(12792581-12792624)
chr7 (453-499)||(529381-529427)
chr7 (453-499)||(33678786-33678832)
chr7 (451-505)||(36517579-36517633)
chr7 (453-499)||(44821965-44822011)
chr7 (457-498)||(5569658-5569699)
chr7 (453-498)||(20881654-20881699)
chr7 (392-429)||(24048650-24048687)
chr7 (457-498)||(32410546-32410587)
chr7 (453-498)||(40530427-40530472)
chr7 (460-505)||(46104327-46104372)
[»] chr6 (15 HSPs)
chr6 (453-499)||(31624096-31624142)
chr6 (453-498)||(26694885-26694930)
chr6 (453-498)||(34430479-34430524)
chr6 (453-497)||(835267-835311)
chr6 (454-498)||(20368199-20368243)
chr6 (453-500)||(9559560-9559606)
chr6 (453-499)||(6647393-6647439)
chr6 (452-497)||(837233-837278)
chr6 (451-496)||(2455819-2455864)
chr6 (453-498)||(5564146-5564191)
chr6 (453-498)||(6536622-6536667)
chr6 (453-498)||(9763567-9763612)
chr6 (453-498)||(35099044-35099089)
chr6 (429-583)||(9093545-9093705)
chr6 (451-491)||(32729163-32729203)
[»] scaffold0050 (1 HSPs)
scaffold0050 (453-498)||(58749-58794)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 267 - 616
Target Start/End: Original strand, 35394325 - 35394679
Alignment:
Q  267 gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctcttccatctccaacgaccttaaactccc 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35394325 gccagattcctaatttggctcggatttatctcattggcttctacgaagaacgcgaatttgcattatacgtctcttccatctccaacgaccttaaacttcc 35394424  T
Q  367 tgttaggttggatttcatgcctgaatgaattcacttatttgagtttatctactaacataagtaaatagtttatgacattgttcata-----ttttcaact 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||    
T  35394425 tgttaggttggatttcatgcctgaatgaattcacttatttgagtttatctactaacataaataaatagtttatgacattgttcataagctgttttcaact 35394524  T
Q  462 tattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttatttactttttgttatagaactagtgtttac 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  35394525 tattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaaccatttcactttatttactttttgttatagaaatagtgtttac 35394624  T
Q  562 ataagcgtttatcacgataagtgtttgagacttaaacttcctgttaggtaggatt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35394625 ataagcgtttatcacgataagtgtttgagacttaaacttcctgttaggttggatt 35394679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 35394034 - 35394255
Alignment:
Q  5 ggatgtcgaagaatatggggattgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatcattcaa 104  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35394034 ggatctcgaataagatggggattgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatcattcaa 35394133  T
Q  105 cattcctaaaccactctttccattagctggacaacctatggttcatcatccaatctctgcttgtcaaaaagtattctcactcattcactctcacatttca 204  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35394134 cattcctaaaccactctttccattagctggacaaccaatggttcatcatccaatctctgcttgtcaaaaagtattctcactcgttcactctcacatttca 35394233  T
Q  205 tattcatatctttaatcttctg 226  Q
    ||||||||||| ||||||||||    
T  35394234 tattcatatctataatcttctg 35394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 41671362 - 41671320
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaa 495  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41671362 ttttcaacttattttcataaatttttcaagatagcttatgaaa 41671320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 535
Target Start/End: Complemental strand, 52619057 - 52618973
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattta 535  Q
    |||||||| |||||||||| ||  ||||||||||||||| |||||||||  ||||  | |||||||||| |||| ||||||||||    
T  52619057 tattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaactttattta 52618973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 555
Target Start/End: Original strand, 33405197 - 33405288
Alignment:
Q  465 tttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttta-tttactttttgttatagaactagt 555  Q
    |||||||| ||||||||||||||||||||||||||  ||||  | |||||||||| | || |||||| ||||| ||||| ||||||| ||||    
T  33405197 tttcataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaaattaactttattttaccttttgctatagaaatagt 33405288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 500
Target Start/End: Complemental strand, 37273186 - 37273139
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  37273186 ttttcaacttatttccataagttctccaagatagcttatgaaaacagt 37273139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 26878198 - 26878124
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||| |||||||||||||||     |||||| | ||||||||| ||||||||||||||||| |||||||||    
T  26878198 aaatagttaatgacattgttcataaactgttttcagcatattttcattaattcttcaagatagctaatgaaaaca 26878124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 39602228 - 39602274
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacag 39602274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 2719513 - 2719468
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  2719513 cttattttcataagttctccaagatagcttatgaaaacagtttata 2719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 21367719 - 21367674
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaaca 21367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 36887556 - 36887511
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttatgaaaaca 36887511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 36878775 - 36878818
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||    
T  36878775 ttttcagctttttttcataagttcttcaagatagcttatgaaaa 36878818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 3845580 - 3845626
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||||||||| |||| ||||||| |||||||||||||    
T  3845580 ttttcagcttattttcataagttctccaagataacttatgaaaacag 3845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 32582796 - 32582750
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  32582796 ttttcaacttatttccataagttctccaaaatagcttatgaaaacag 32582750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 482807 - 482852
Alignment:
Q  450 atattttcaacttattttcataaattcttcaagatagcttatgaaa 495  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  482807 atattttcagcttatttccataaactcttcaagatagtttatgaaa 482852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 901976 - 901931
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||| ||||||||| ||||||    
T  901976 ttttcaacttattttcataagttctccaatatagcttataaaaaca 901931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 22203474 - 22203437
Alignment:
Q  461 ttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  22203474 ttattttcataagttctccaagatagcttatgaaaaca 22203437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 534
Target Start/End: Original strand, 36783352 - 36783433
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattt 534  Q
    |||||| ||||| ||||||| | || ||| |||||||||||||||||   ||| || |||||||||| |||| |||||||||    
T  36783352 ttttcagcttatattcataattgctccaatatagcttatgaaaacagctaatagtttatatgaaaacaattttactttattt 36783433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 38665308 - 38665353
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||| |||||||||||||| |||||||||||| | ||||||    
T  38665308 tttcaacttcttttcataaattctccaagatagcttaaggaaacag 38665353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 39980781 - 39980736
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||| ||||||||| ||||||    
T  39980781 ttttcaacttattttcataagttctccaatatagcttataaaaaca 39980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 44747427 - 44747472
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||| ||||||||||||| || | |||||||||||||||||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacag 44747472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 47132383 - 47132338
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||| ||||||||| ||||||    
T  47132383 ttttcaacttattttcataacttctccaatatagcttataaaaaca 47132338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 22031250 - 22031182
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaac 519  Q
    |||||||| ||||||| ||| |  ||||||| |||||||||||||||| | || |||| ||||||||||    
T  22031250 tattttcatcttatttccatcatctcttcaaaatagcttatgaaaacaatttacattttatatgaaaac 22031182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 25170858 - 25170815
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  25170858 tttcaacttattttcataagctct-caagatagcttatgaaaaca 25170815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 38902139 - 38902083
Alignment:
Q  437 tatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagct 488  Q
    ||||||||||||||||     |||||||||||||||||| | |||||||||||||||    
T  38902139 tatgacattgttcatacgttgttttcaacttattttcatgagttcttcaagatagct 38902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 45535237 - 45535281
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||||    
T  45535237 tttcaacttattttcataaactctccagtatagcttatgaaaaca 45535281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 12425623 - 12425494
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttta-tttactttttgttatagaac 551  Q
    |||||||||||||||||||| |||| ||||||||||| |||||||||  ||||  | ||| |||||| |||| |||||| ||||  ||||  |||| ||     
T  12425623 ttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactatataaa 12425524  T
Q  552 tagtgtttacataagcgtttatcacgataa 581  Q
    |||| | ||||||||||||||||| |||||    
T  12425523 tagtttatacataagcgtttatcatgataa 12425494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 496
Target Start/End: Complemental strand, 7985021 - 7984978
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  7985021 ttttcagcttattttcataaattctccaagatagcttatgaaaa 7984978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 9202744 - 9202847
Alignment:
Q  436 ttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttt 530  Q
    |||||||||||||||||     ||| || ||||||||||||| |||||||||||| |||||||||||||  |||   | |||||||||| |||| |||||    
T  9202744 ttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaacttt 9202843  T
Q  531 attt 534  Q
    ||||    
T  9202844 attt 9202847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 28777074 - 28776999
Alignment:
Q  429 aaatagtttatgacattgttca-----tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||||||||     |||||| | ||||||||||| | |||| |||||||||||||||||||||    
T  28777074 aaatagtttatgacattgttcaaaaactatttttatcttattttcattagttctccaagatagcttatgaaaacag 28776999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 4014442 - 4014488
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||||    
T  4014442 ttttcagcttattttcataagttctccaagatagcttatgaaaacag 4014488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 532
Target Start/End: Complemental strand, 7319457 - 7319379
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttat 532  Q
    ||||| |||||||| |||| |||| |||||||||||| ||||||||| ||||  | |||||||||| |||| |||||||    
T  7319457 tttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaactttat 7319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 13604867 - 13604913
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||    
T  13604867 ttttcaacttattttcataagctcttcaagataacttatgaaaacag 13604913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 533
Target Start/End: Complemental strand, 906878 - 906809
Alignment:
Q  464 ttttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttatt 533  Q
    ||||||||| || ||||||||||| |||||||||||| |||||||  || |||||| |||| ||||||||    
T  906878 ttttcataagttattcaagatagcctatgaaaacagtttatattttgtaggaaaacaattttactttatt 906809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 505
Target Start/End: Original strand, 7319033 - 7319078
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  7319033 cttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 7674700 - 7674655
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||    
T  7674700 ttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 36318826 - 36318781
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  36318826 ttttcagcttatttacataaattctccaagatagcttatgaaaaca 36318781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 36639567 - 36639522
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  36639567 cttattttcataagctcttcaagatagcttatgaaaacagtctata 36639522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 39105518 - 39105470
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| | ||||||||||||| |||| |||||||||||||||||||||    
T  39105518 tatttttagcttattttcataagttctccaagatagcttatgaaaacag 39105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 21768215 - 21768261
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||| |||  ||||||||||| |||||||||||||    
T  21768215 ttttcaacttattttcgtaagctcttcaagataacttatgaaaacag 21768261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 32197772 - 32197726
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||||||||| ||||||| ||||||||||| ||||||    
T  32197772 ttttcatcttattttcataagttcttcaggatagcttatggaaacag 32197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 490
Target Start/End: Original strand, 35445860 - 35445898
Alignment:
Q  452 attttcaacttattttcataaattcttcaagatagctta 490  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  35445860 attttcaccttattttcataaattctccaagatagctta 35445898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 10272449 - 10272494
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaaca 10272494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 26516453 - 26516400
Alignment:
Q  452 attttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||| ||||||| |||||| ||| | |||||||||||||||||||| ||||    
T  26516453 attttcatcttatttccataaaatctgctagatagcttatgaaaacagtttata 26516400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 29925893 - 29925848
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||    
T  29925893 ttttcaacttattttcataagttctccaatatagcttatgtaaaca 29925848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 32703294 - 32703339
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||| ||||||||| | ||||||||||||||||||    
T  32703294 ttttcagcttatttttataaattctcctagatagcttatgaaaaca 32703339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 25461334 - 25461386
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| ||||||||||||||| |  |||||||| ||||||||||||| ||||    
T  25461334 ttttcagcttattttcataaatacgccaagataggttatgaaaacagtttata 25461386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 51630163 - 51630082
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattt 534  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||  ||||  | |||| ||||| |||| |||||||||    
T  51630163 ttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattt 51630082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 18011916 - 18011876
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  18011916 cttattttcataaactcttcaagatagcttatgaaaacagt 18011876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 47800675 - 47800629
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacag 47800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 534
Target Start/End: Original strand, 28300317 - 28300398
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattt 534  Q
    ||||||||||||||||||||  ||||||||||||| |||||||| ||| ||||  | |||  ||||| |||| |||||||||    
T  28300317 ttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaatttaactttattt 28300398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 567
Target Start/End: Original strand, 30338616 - 30338725
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatg-aaaacagtgtatatttgatatgaaaactatttcactttatt-tactttttgttatagaactagtgt 557  Q
    |||||||||||||| ||| ||||| |||||||| |||||||| ||||  | ||||||||||  ||| |||||||| ||  ||||||||||||| |||| |    
T  30338616 cttattttcataaactctccaagagagcttatgaaaaacagtttatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagttt 30338715  T
Q  558 ttacataagc 567  Q
     |||||||||    
T  30338716 atacataagc 30338725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 55414438 - 55414483
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||    
T  55414438 ttttcaacttattttcataagttctccaagataacttatgaaaaca 55414483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 524
Target Start/End: Complemental strand, 20907399 - 20907328
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactattt 524  Q
    ||||||||||||||||||   ||||||| |||||||| |||||||||| ||||  | |||||||||| ||||    
T  20907399 ttttcaacttattttcattggttcttcaggatagcttgtgaaaacagtttatagcttatatgaaaacaattt 20907328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 2111075 - 2111113
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  2111075 cttattttcataagtccttcaagatagcttatgaaaaca 2111113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 3155655 - 3155609
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||||||| | ||||||||||||| ||||||||||||    
T  3155655 ttttcagcttattttcattagttcttcaagatagtttatgaaaacag 3155609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 17822890 - 17822928
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  17822890 cttattttcataagttctccaagatagcttatgaaaaca 17822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 24169344 - 24169270
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||||| ||||||     ||||||||||||||||||||  ||| ||||||||||| ||||||||    
T  24169344 aaatagcttatgacatttttcataagattttttcaacttattttcataagctctccaagatagcttgtgaaaaca 24169270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 2996625 - 2996580
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||    
T  2996625 ttttcaacttattttcatacgctctccaagatagcttatgaaaaca 2996580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 21731674 - 21731719
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  21731674 ttttcaacttactttcataaattctccaatatagcttataaaaaca 21731719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 35571650 - 35571695
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||| || ||||  ||||||||||||||||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacag 35571695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 39691161 - 39691206
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  39691161 ttttcaacttattttcgtaagttcttcaatatagcttataaaaaca 39691206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 825508 - 825552
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||    
T  825508 ttttcagcttattttcataagttctccaaaatagcttatgaaaac 825552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 9720584 - 9720612
Alignment:
Q  399 acttatttgagtttatctactaacataag 427  Q
    |||||||||||||||||||||||||||||    
T  9720584 acttatttgagtttatctactaacataag 9720612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 22662181 - 22662209
Alignment:
Q  399 acttatttgagtttatctactaacataag 427  Q
    |||||||||||||||||||||||||||||    
T  22662181 acttatttgagtttatctactaacataag 22662209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 22666660 - 22666688
Alignment:
Q  399 acttatttgagtttatctactaacataag 427  Q
    |||||||||||||||||||||||||||||    
T  22666660 acttatttgagtttatctactaacataag 22666688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 23459682 - 23459634
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||| ||||||| || ||||||||  |||||||||||||    
T  23459682 tattttcaacttatattcataagtttttcaagatctcttatgaaaacag 23459634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 28423582 - 28423530
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| |||||||||||||| ||| || ||||||||| ||||||| ||||||    
T  28423582 ttttcagcttattttcataaactctacatgatagcttaggaaaacaatgtata 28423530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 497
Target Start/End: Complemental strand, 29388666 - 29388622
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    ||||||||||||||||||||||||| ||  ||||||||| |||||    
T  29388666 ttttcaacttattttcataaattctccagtatagcttataaaaac 29388622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 52259685 - 52259637
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||||||||  ||| | ||||||||||| |||||||    
T  52259685 tattttcaacttattttcataagctctcccagatagcttataaaaacag 52259637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 53673676 - 53673728
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| ||||||| |||||  ||| |||||||||||||||||||||| ||||    
T  53673676 ttttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 26779943 - 26779988
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  26779943 ttttcaacttattttcataagttcttcaagatagcttatgaaaaca 26779988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 51695511 - 51695558
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  51695511 tattttcagcttattttcataaattctccaagatagcttatgaaaaca 51695558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 535
Target Start/End: Complemental strand, 28910042 - 28909960
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattta 535  Q
    |||||| ||||||||||||| ||||||| | ||||||||||||||| |||||| ||||||| ||||   ||| ||||||||||    
T  28910042 ttttcatcttattttcataacttcttcatgctagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattta 28909960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 34290288 - 34290242
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacag 34290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 45975742 - 45975696
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||    
T  45975742 ttttcagcttattttcataaattctccaagatagcttatgaaaacag 45975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 7137014 - 7137062
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||    
T  7137014 tattttcagcttattttcataagttctccaagatagcttatgaaaacag 7137062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 27820353 - 27820401
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  27820353 tattttcagcttattttcataaattctccaagatagcttataaaaacag 27820401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 534
Target Start/End: Original strand, 7218092 - 7218173
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattt 534  Q
    |||||||||||||||||||| |||| || ||||| |||||||||||   ||||  | |||||||||| |||| |||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 37842373 - 37842418
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaaca 37842418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 27820212 - 27820252
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttat 491  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  27820212 tattttcagcttattttcataaattctttaagatagcttat 27820252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 500
Target Start/End: Original strand, 38867856 - 38867896
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  38867856 cttattttcataagttcttcaagataacttatgaaaacagt 38867896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 46225833 - 46225797
Alignment:
Q  461 ttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||||||||||||||||||||||| ||||||||||    
T  46225833 ttattttcataaattcttcaagatagtttatgaaaac 46225797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 500
Target Start/End: Original strand, 41195211 - 41195258
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||| ||||||||||||| |||| |||||||| |||||||||||||    
T  41195211 ttttcagcttattttcataagttctccaagatagtttatgaaaacagt 41195258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 6102206 - 6102160
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| ||||||| |||||||||| | |||||||||||||||||||    
T  6102206 ttttcagcttatttccataaattctcccagatagcttatgaaaacag 6102160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 24915069 - 24915115
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||| || |||| ||||| |||||||||||||||    
T  24915069 ttttcaacttattttcacaagttctccaagacagcttatgaaaacag 24915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 43332536 - 43332490
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| |||||||| ||||  |||||||||||||||||||||||||    
T  43332536 ttttcagcttattttaataagctcttcaagatagcttatgaaaacag 43332490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 51190900 - 51190862
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttat 491  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  51190900 ttttcagcttattttcataagttcttcaagatagcttat 51190862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 7941660 - 7941615
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||||||||||||||||||| |||| | | ||||||||||||||    
T  7941660 tattttcaacttattttcataagttctccgaaatagcttatgaaaa 7941615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 12564517 - 12564562
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||| ||||| |||| ||||||||||||||||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaaca 12564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 29270299 - 29270344
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||||||    
T  29270299 ttttcaacttattttgataagttcttcatgatagcttataaaaaca 29270344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 1232923 - 1232959
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagctt 489  Q
    |||||| |||||||||||||||||| |||||||||||    
T  1232923 ttttcagcttattttcataaattctccaagatagctt 1232959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 4576855 - 4576811
Alignment:
Q  455 ttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||| ||||||||||||| || ||||| |||||||||||||||||    
T  4576855 ttcagcttattttcataagttattcaatatagcttatgaaaacag 4576811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 5063515 - 5063487
Alignment:
Q  451 tattttcaacttattttcataaattcttc 479  Q
    |||||||||||||||||||||||||||||    
T  5063515 tattttcaacttattttcataaattcttc 5063487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 497
Target Start/End: Complemental strand, 17779009 - 17778965
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||| ||||||| || ||||||| |||||||||||||||||||    
T  17779009 ttttcaccttatttccaaaaattctccaagatagcttatgaaaac 17778965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 27145732 - 27145785
Alignment:
Q  436 ttatgacattgttcata----ttttcaacttattttcataaattcttcaagata 485  Q
    |||||||||||||||||    |||||| ||||||||||||| ||||||||||||    
T  27145732 ttatgacattgttcataagttttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 32113710 - 32113658
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| |||||||||||||| ||| ||| ||| |||||||||||||| ||||    
T  32113710 ttttcagcttattttcataaaatctccaacataacttatgaaaacagtttata 32113658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 550
Target Start/End: Original strand, 44032015 - 44032115
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttta-tttactttttgttataga 549  Q
    |||||||| || |||| |||||  ||||||||||| |||| ||||| ||| ||||  | |||||||||| |||| |||||| ||||  ||||||||||||    
T  44032015 tattttcagctaatttccataagctcttcaagataacttaagaaaatagtttatagcttatatgaaaacaatttgactttattttagcttttgttataga 44032114  T
Q  550 a 550  Q
    |    
T  44032115 a 44032115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 534
Target Start/End: Complemental strand, 18066182 - 18066099
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcactttattt 534  Q
    |||||||| ||||||||| ||| |||| |||||||||||||||||||||  ||||  | |||||||||| |||| |||||||||    
T  18066182 tattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttattt 18066099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 500
Target Start/End: Original strand, 3067404 - 3067444
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  3067404 cttattttcataaactcttcaagatagcttatgaaaacagt 3067444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 26626954 - 26626879
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||| |||||||||||||||||     ||||||  |||||||||||| |||| |||||||||||||||||||||    
T  26626954 aaatagcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacag 26626879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 43985019 - 43985066
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||    
T  43985019 tattttcagcttattttcataagctcttcaagatagcttatgaaaaca 43985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 1810716 - 1810671
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||    
T  1810716 ttttcagcttattttcataaactcttcaagatagcttataaaaaca 1810671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 581
Target Start/End: Complemental strand, 9174889 - 9174737
Alignment:
Q  436 ttatgacattgttca-----tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttt 530  Q
    |||||||||||||||     |||||||| |||||||||||||  |||  ||||||||||||||||||||  |||| |  |||||||| |||||| ||| |    
T  9174889 ttatgacattgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatagtaaatatgaaagctatttaactat 9174790  T
Q  531 atttactttttgt--tatagaactagtgtttacataagcgtttatcacgataa 581  Q
    ||||  || ||||  ||||||| |||  | |||||||| |||||||| |||||    
T  9174789 atttttttcttgtgctatagaaatagcttatacataagtgtttatcatgataa 9174737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 25800890 - 25800807
Alignment:
Q  451 tattttcaacttattttcataaattc-------ttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcac 527  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||  ||||  | |||||||||| |||||||    
T  25800890 tattttcaacttattttcataaattcctaattcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaatttcac 25800807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 40279459 - 40279414
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||    
T  40279459 ttttcaacttattttcataagttctccaatatagcttatgaaaaca 40279414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 40682384 - 40682456
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||| |||||||||||||||||     |||||||||||||||||||| ||| |||||||| |||||||||||    
T  40682384 aaatagcttatgacattgttcataagttgttttcaacttattttcataagttc-tcaagatatcttatgaaaac 40682456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 26143656 - 26143704
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  26143656 tattttcagcttattttcataagttctccaagttagcttatgaaaacag 26143704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 33319830 - 33319882
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| ||||||||||||| |||| |||||||| ||||||||||||| ||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtttata 33319882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 33941960 - 33941916
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||    
T  33941960 tttcaacttattatcataaactctccaagatagcttatgaaaaca 33941916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 496
Target Start/End: Complemental strand, 680555 - 680512
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||| |||||||||| || |||||||||||||||||||||||    
T  680555 ttttcagcttattttcacaagttcttcaagatagcttatgaaaa 680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 36863641 - 36863688
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||| ||||||||||||||||  ||| ||||||||||||||||||||    
T  36863641 tatttccaacttattttcataagctctccaagatagcttatgaaaaca 36863688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 500
Target Start/End: Complemental strand, 8017477 - 8017439
Alignment:
Q  462 tattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  8017477 tattttcataagttctccaagatagcttatgaaaacagt 8017439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 23956050 - 23956088
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttat 491  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  23956050 ttttcaacttattttcataaattcttcaatacagcttat 23956088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 1056369 - 1056414
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||||| |||||||  ||||| ||||||||||||||||||||||    
T  1056369 tattttcagcttatttctataaactcttcaagatagcttatgaaaa 1056414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 428
Target Start/End: Complemental strand, 2416453 - 2416424
Alignment:
Q  399 acttatttgagtttatctactaacataagt 428  Q
    ||||||||||||||||||||||||||||||    
T  2416453 acttatttgagtttatctactaacataagt 2416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 3611271 - 3611226
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||||||||| |||| ||||||||||| |||||||||| ||||    
T  3611271 cttattttcataagttctccaagatagcttgtgaaaacagtctata 3611226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 6988167 - 6988122
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||    
T  6988167 ttttcatcttatttctataaactcttcaagatagcttatgaaaaca 6988122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 14364195 - 14364232
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagct 488  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  14364195 tattttcaacttattttcataagttcttcaaggtagct 14364232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 35379034 - 35379079
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||||||||||  ||| ||||||||||||||||||||    
T  35379034 ttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 44590086 - 44590041
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| |||||| ||| || |||||||||||||||||||||||||    
T  44590086 ttttcagcttattctcacaagttcttcaagatagcttatgaaaaca 44590041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 45229563 - 45229518
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| ||||  |||||||||||||||||||    
T  45229563 ttttcagcttattttcataagttctcgaagatagcttatgaaaaca 45229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 499
Target Start/End: Original strand, 1742052 - 1742096
Alignment:
Q  455 ttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||| |||||| |||||| ||||| ||||||||||||    
T  1742052 ttcaacttatttccataaactcttcatgatagattatgaaaacag 1742096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 9478003 - 9477959
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||  ||| || |||||||||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaaca 9477959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 19629414 - 19629370
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||||    
T  19629414 tttcaacttattttcataaactctccagtatagcttatgaaaaca 19629370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 19826315 - 19826271
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||||    
T  19826315 tttcaacttattttcataaactctccagtatagcttatgaaaaca 19826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 9956803 - 9956877
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||| |||||||||||     |||||| ||||||||||||| |||| |||||||| |||||||||||    
T  9956803 aaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaaca 9956877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 11494197 - 11494145
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatat 506  Q
    ||||| |||||||||||||  |||||||||||||||||||||| ||| |||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttatgaaaatagtttatat 11494145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 27028885 - 27028837
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||||    
T  27028885 tattttcagcttattttcataagctctccaagatagcttatgaaaacag 27028837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 1433603 - 1433556
Alignment:
Q  450 atattttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||||||||||||||||||||  ||| || ||||||||||||||||    
T  1433603 atattttcaacttattttcataagctctccaggatagcttatgaaaac 1433556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 7714294 - 7714228
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaac 519  Q
    |||||||||||||||||| |  ||| |||||||||| |||||||||   |||| |||||||||||||    
T  7714294 ttttcaacttattttcatgagctctccaagatagctcatgaaaacaacttatagttgatatgaaaac 7714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 4762561 - 4762516
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||| |||||  ||||||||||||||||||||||||    
T  4762561 ttttcagcttatttacataagctcttcaagatagcttatgaaaaca 4762516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 32131345 - 32131304
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaa 494  Q
    |||||||||||||||||||| |||| |||||||| |||||||    
T  32131345 ttttcaacttattttcataagttctacaagatagattatgaa 32131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 35749588 - 35749633
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||| ||||||||||| ||||| ||||||||||||| |||||    
T  35749588 ttttcaacatattttcataagttctttaagatagcttatggaaaca 35749633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 6525956 - 6525928
Alignment:
Q  400 cttatttgagtttatctactaacataagt 428  Q
    |||||||||||||||||||||||||||||    
T  6525956 cttatttgagtttatctactaacataagt 6525928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 464 - 500
Target Start/End: Complemental strand, 14905653 - 14905617
Alignment:
Q  464 ttttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||||||||||| |||||||||| |||||||||||    
T  14905653 ttttcataaattctccaagatagctaatgaaaacagt 14905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 575
Target Start/End: Original strand, 37353329 - 37353389
Alignment:
Q  515 aaaactatttcactttatttactttttgttatagaactagtgtttacataagcgtttatca 575  Q
    ||||| |||| ||||||||||  ||||||||||||| |||| | |||||||||| ||||||    
T  37353329 aaaacaatttaactttatttatcttttgttatagaaatagtttgtacataagcgcttatca 37353389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 42370379 - 42370431
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||||| ||||||| |||||| |||||| |||||||||||| |||||| ||||    
T  42370379 ttttcagcttatttccataaactcttcatgatagcttatgagaacagtttata 42370431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 44236839 - 44236887
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| |||||||||||||  ||| ||| |||||||||||||||||    
T  44236839 tattttcagcttattttcataagctctccaatatagcttatgaaaacag 44236887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 12110404 - 12110366
Alignment:
Q  461 ttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacag 12110366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 43648292 - 43648246
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacag 43648246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 530
Target Start/End: Complemental strand, 47177681 - 47177611
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatttcacttt 530  Q
    |||||||||||||||||| ||||||||||| |||||||||  ||||  | |||||||||| |||| |||||    
T  47177681 cttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaacaatttaacttt 47177611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 47130803 - 47130848
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||    
T  47130803 ttttcaacttattttcacaagttctccaagatagcttatgaaaaca 47130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 25596085 - 25596033
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||||||||||||||||  ||| |||||||||||||||||| ||| ||||    
T  25596085 ttttcaacttattttcataagctctccaagatagcttatgaaaagagtttata 25596033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 12792581 - 12792624
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||| |||||||||||||  ||||||||||||||||||||||    
T  12792581 ttttcagcttattttcataagctcttcaagatagcttatgaaaa 12792624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 529427 - 529381
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||| |||||||||||  ||| |||||||||||||||||||||    
T  529427 ttttcaacatattttcataagctctccaagatagcttatgaaaacag 529381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 33678832 - 33678786
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||| || || | |||||||||||||||||||||    
T  33678832 ttttcaacttattttcacaagttttccaagatagcttatgaaaacag 33678786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 36517633 - 36517579
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    ||||||||  |||||||||||| |||| |||||||||||||||||| ||| ||||    
T  36517633 tattttcagtttattttcataatttctccaagatagcttatgaaaatagtttata 36517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 44822011 - 44821965
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacag 44821965  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 5569658 - 5569699
Alignment:
Q  457 caacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  5569658 caacttattttcattagttcttcaagataacttatgaaaaca 5569699  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 20881654 - 20881699
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| ||||| ||||||| |||||||||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaaca 20881699  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 24048687 - 24048650
Alignment:
Q  392 tgaattcacttatttgagtttatctactaacataagta 429  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  24048687 tgaatttacttatttgagtttatctactgacataagta 24048650  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 32410587 - 32410546
Alignment:
Q  457 caacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||| |||||||||  ||||||||||||||||||||    
T  32410587 caacttatttccataaattccccaagatagcttatgaaaaca 32410546  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 40530427 - 40530472
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||||||||||||||||| ||||| | |||||||||| ||||||    
T  40530427 ttttcaacttattttcataagttctttaggatagcttattaaaaca 40530472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Original strand, 46104327 - 46104372
Alignment:
Q  460 cttattttcataaattcttcaagatagcttatgaaaacagtgtata 505  Q
    |||| |||||||| |||||||||||| |||||||||||||| ||||    
T  46104327 cttagtttcataagttcttcaagataacttatgaaaacagtttata 46104372  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 31624142 - 31624096
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||    
T  31624142 ttttcaacttattttcataatttctccaagatagcctatgaaaacag 31624096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 26694930 - 26694885
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||||    
T  26694930 ttttcagcttattttcataagttcttcaagatagtttatgaaaaca 26694885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 34430479 - 34430524
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||    
T  34430479 ttttcagcttattttcataacttctccaagatagcttatgaaaaca 34430524  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 835267 - 835311
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatgaaaac 835311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 20368199 - 20368243
Alignment:
Q  454 tttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  20368199 tttcaacttattttcataagttctccaagaaagcttatgaaaaca 20368243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 500
Target Start/End: Original strand, 9559560 - 9559606
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacagt 500  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||||    
T  9559560 ttttcaacttattttcataagttattcaagatagctt-tgaaaacagt 9559606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 6647439 - 6647393
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaacag 499  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||||    
T  6647439 ttttcaacttattttcataagctctctaagatagcttatgaaaacag 6647393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 837233 - 837278
Alignment:
Q  452 attttcaacttattttcataaattcttcaagatagcttatgaaaac 497  Q
    ||||||| ||||||||||||| |||| |||||||||| ||||||||    
T  837233 attttcagcttattttcataagttctccaagatagctaatgaaaac 837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 2455864 - 2455819
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttatgaaaa 496  Q
    |||||||||||||||| |||||  ||| ||||||||||||||||||    
T  2455864 tattttcaacttatttccataagctctccaagatagcttatgaaaa 2455819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 5564146 - 5564191
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  5564146 ttttcagcttatttgcataaactcttcaagacagcttatgaaaaca 5564191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 6536667 - 6536622
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  6536667 ttttcaacttattttcataaattctccaatatagcttctaaaaaca 6536622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 9763612 - 9763567
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  9763612 ttttcaacttaatttcataagttctacaatatagcttatgaaaaca 9763567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 35099089 - 35099044
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||||||||| |||| ||  |||||||||||||||||||    
T  35099089 ttttcaacttattttcaaaaatactctaagatagcttatgaaaaca 35099044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 583
Target Start/End: Original strand, 9093545 - 9093705
Alignment:
Q  429 aaatagtttatgacattgttcata-----ttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaactatt 523  Q
    |||||| ||||||||||||| |||     |||||| ||||||||| ||| ||||  |||| |||||||||||||||  ||||  | ||| |||||| |||    
T  9093545 aaatagcttatgacattgttaataacctgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatt 9093644  T
Q  524 tcacttta-tttactttttgttatagaactagtgtttacataagcgtttatcacgataagt 583  Q
    | |||||| ||||  ||||| ||||||| |||  | | |||||||| |||||| |||||||    
T  9093645 taactttattttatcttttgatatagaaatagcttatccataagcgcttatcatgataagt 9093705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 32729163 - 32729203
Alignment:
Q  451 tattttcaacttattttcataaattcttcaagatagcttat 491  Q
    |||||||||||||| ||||||| |||||||| |||||||||    
T  32729163 tattttcaacttatgttcataagttcttcaaaatagcttat 32729203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 58794 - 58749
Alignment:
Q  453 ttttcaacttattttcataaattcttcaagatagcttatgaaaaca 498  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  58794 ttttcaacttaatttcataagttcttcaacatagcttatgaaaaca 58749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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