View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_4 (Length: 588)
Name: NF18354_low_4
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 306 - 572
Target Start/End: Complemental strand, 8085933 - 8085667
Alignment:
| Q |
306 |
tgagataatcgttgttggacacatggttgtttctttgggttttcttgcattacactactttttattttaatatattcaatatggtactgcaattaatata |
405 |
Q |
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| T |
8085933 |
tgagataatcgttgttgtacacatggttgtttctttgggttttcttgcattacactactttttattttaatatattcaatatggtactgcaattaatata |
8085834 |
T |
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| Q |
406 |
tcgtaggtgatagttttatcaataaaaaacatcataatcttatattgaaaccatgaccaagttaataatcatacagtgatcttctaaaccgtgtaaatga |
505 |
Q |
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| T |
8085833 |
tagtaggtgatagttttatcaataaaaaacatcataatcttatattgaaaccatgaccaagttaataatcattcagtgatcttctaaaccgtgtaaatga |
8085734 |
T |
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| Q |
506 |
acgttctttttatatttgatatagtggttctttgactcaccaataatataggcgaggtctactacat |
572 |
Q |
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| T |
8085733 |
acgttctttttatatttgatatagtggttctttgactcaccaataatataggtgaggtctactacat |
8085667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 8086226 - 8085987
Alignment:
| Q |
11 |
taatactcatggttttgctaaattgttaatcaccggcgattgttagagtggcgatcagtggtggttgatggtagccaactgagtggtagccaatggagat |
110 |
Q |
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| T |
8086226 |
taatactcatggttttgctaaattgttaatcaccggcgattgctagagtggcgatcagtggtggttggtggtagccaactgagtggtagccaatggagat |
8086127 |
T |
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| Q |
111 |
caaattaagtgggggtgagaggcggctagagttttggtcataata-taatcagtggtggttggaattgttgtcaatggtgatcaaagtgatggatgacga |
209 |
Q |
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| T |
8086126 |
caaattaagtgggggtgagaggcggctagagttttggtcataatagtaatcagtggtggttggaattgttgtcaatggtgatcaaagtgatggatgacga |
8086027 |
T |
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| Q |
210 |
aggtgttcagataagtgattgttttcttcttgcattacactac |
252 |
Q |
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| T |
8086026 |
aggtgttcagataagtgattgtt---ttcttgcattacactac |
8085987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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