View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18354_low_6 (Length: 523)
Name: NF18354_low_6
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 249 - 513
Target Start/End: Original strand, 4953764 - 4954028
Alignment:
| Q |
249 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
348 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4953764 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaata |
4953863 |
T |
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| Q |
349 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
448 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953864 |
caactcgaaatatgagctgtcagatctttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
4953963 |
T |
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| Q |
449 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
513 |
Q |
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| T |
4953964 |
ttggggagtttgagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 249 - 513
Target Start/End: Original strand, 4938055 - 4938319
Alignment:
| Q |
249 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
348 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938055 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaata |
4938154 |
T |
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| Q |
349 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
448 |
Q |
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| T |
4938155 |
caactcgaaatatgagccgtcggatctttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggt |
4938254 |
T |
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| Q |
449 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
513 |
Q |
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| T |
4938255 |
ttggggagtttgagatgatatggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4937813 - 4937991
Alignment:
| Q |
7 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4937813 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaataacaattagccaacacataatgatagatagatattcattcactaacc |
4937912 |
T |
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| Q |
107 |
caactatggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
185 |
Q |
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| T |
4937913 |
caactaaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4937991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4953522 - 4953700
Alignment:
| Q |
7 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953522 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaaaaacaattagccaacacataatgatagatagatattcattcactaacc |
4953621 |
T |
|
| Q |
107 |
caactatggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
185 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953622 |
caactaaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4953700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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