View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18354_low_7 (Length: 422)
Name: NF18354_low_7
Description: NF18354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18354_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 261 - 409
Target Start/End: Original strand, 26886852 - 26887000
Alignment:
| Q |
261 |
aatttatacagagttgcaactttctttcacaagaaaaagagcacaatgcgctcacttgtgcatatacacgggtattctgctagtataaataaaatcataa |
360 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26886852 |
aatttatacacaattgcaactttctttcacaagaaaaagagcacaatgcgctcacttgtgcgtatacacgggtattctgctggtataaataaaatcataa |
26886951 |
T |
|
| Q |
361 |
gctaaatgaagaagaaagggtaaacaataatagtaatggaagaaagtga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26886952 |
gctaaatgaagaagaaagggtaaacaataataataatggaagaaagtga |
26887000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 26886682 - 26886740
Alignment:
| Q |
93 |
gtaatatatggatgtgtctatatttttaatatatcaatacgggaacctgtttatatatt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26886682 |
gtaatatatggatgtgtctatatttttaatatatcaatacgggaacctgtttatatatt |
26886740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6358446 - 6358370
Alignment:
| Q |
1 |
accgtatctaaaacaaaatgtgtacatccccattagcttcaccttgtatttaatctgttatgcccatatcattatca |
77 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| ||||||| | ||||| || ||||||||||||||| |
|
|
| T |
6358446 |
accgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtctgtaatccccatatcattatca |
6358370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University