View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_high_1 (Length: 1213)
Name: NF18355_high_1
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 1148; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1148; E-Value: 0
Query Start/End: Original strand, 18 - 1197
Target Start/End: Complemental strand, 42127648 - 42126469
Alignment:
| Q |
18 |
agatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127648 |
agatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacg |
42127549 |
T |
|
| Q |
118 |
tcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccacagcctgttttgacaaagaaaaaactggtaaggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42127548 |
tcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccacaacctgttttgacaaagaaaaaactggtaaggt |
42127449 |
T |
|
| Q |
218 |
cgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctataactagtccaagaattggtaacaaggaaattat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42127448 |
cgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctataactagtccaagaattggtaacaaggaaattat |
42127349 |
T |
|
| Q |
318 |
ggaattcttaaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagacaacatgtcaacctatggaatggattcaatcagc |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42127348 |
ggaattcttgaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagacaacatgtcaacctatggaatggattcaatcagc |
42127249 |
T |
|
| Q |
418 |
gtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctgcattcaagaattggtcaacttct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127248 |
gtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctgcattcaagaattggtcaacttct |
42127149 |
T |
|
| Q |
518 |
cagagaaccttctgctgaagtcacaacctcaccttttgagcaatccatcctatgctccagaagctgaaactgagtctactgaatttattgtggatgtgtc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42127148 |
cagagaaccttctgctgaagtcacaacctcaccttttgagcaatccatcctatgctccagaagctgaaactgagtctactgaatttattgtggatgtgtc |
42127049 |
T |
|
| Q |
618 |
caagtcacaccagtggagtatacatttacttcaactcttggcacttgttttcatttctatcctgttggtttctcctgcttatctttccatcactactttc |
717 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42127048 |
caagtctcaccagtggagtatacatttacttcaactcttggcacttgttttcatttctatccttgtggtttctcctgcttatctttccatcactactttc |
42126949 |
T |
|
| Q |
718 |
caaatactcatcgcaagtttcggtaaatcagcatatagaattcctttgtcaaactatatattttcacttgccttggcaccactttcttggatcctttgca |
817 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126948 |
caaatattcatcgcaagtttcggtaaatcagcatatggaattcctttgtcaaactatatattttcacttgccttggcaccactttcttggatcctttgca |
42126849 |
T |
|
| Q |
818 |
ttgcttctacatgcatttgcatttcattttttggaaattctttcttgaggccaaactatgctcttactcctgaaatgtccatctattcaattgcctttgt |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126848 |
ttgcttctacatgcatttgcatttcattttttggaaattctttcttgaggccaaactacgctcttactcctgaaatgtccatctattcaattgcctttgt |
42126749 |
T |
|
| Q |
918 |
caaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggctacacacctcaaaggaactgtgtttctgaattactggtttgagatactt |
1017 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126748 |
caaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggctacacacctcaaaggaactgtgtttctgaattactggtttgagatactt |
42126649 |
T |
|
| Q |
1018 |
ggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctagtttcaattggtgatgaagctgtcatctctgaaggggttt |
1117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126648 |
ggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctagtttcaattggtgatgaagctgtcatctctgaaggggttt |
42126549 |
T |
|
| Q |
1118 |
tggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccgaaattcttcgattggacct |
1197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126548 |
tggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccgaaattcttcgattggacct |
42126469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 3e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 793 - 1163
Target Start/End: Complemental strand, 24930168 - 24929798
Alignment:
| Q |
793 |
gcaccactttcttggatcctttgcattgcttctacatgcatttgcatttcattttttggaaattctttcttgaggccaaactatgctcttactcctgaaa |
892 |
Q |
| |
|
||||| ||| ||||||| |||||||| ||||| || ||| ||||||||||||| ||||||| |||||| | ||| |||||||| | | | |||| | |
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|
| T |
24930168 |
gcacctcttgcttggattctttgcatcgcttccacttgcgtttgcatttcattgtttggaagttctttagtagggctaaactatgaacatgcctctgaca |
24930069 |
T |
|
| Q |
893 |
tgtccatctattcaattgcctttgtcaaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggctacacacctcaaaggaactgtgtt |
992 |
Q |
| |
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| ||||||||||||| | |||||||| ||||||||||| ||||| | || |||||||| || |||||| ||||||||||||||| |||||| ||||| |
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|
| T |
24930068 |
tctccatctattcaacggattttgtcaagtggtgggcgctatataagactcaagaaatttcctctaaagttttggctacacacctcagaggaacagtgtt |
24929969 |
T |
|
| Q |
993 |
tctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctagtttcaattggtgat |
1092 |
Q |
| |
|
||| || ||||||||||| || | || ||||||||||| ||||||||| || |||| || ||||||||||| ||||| |||| || ||||| || ||| |
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|
| T |
24929968 |
tctaaagtactggtttgaaatgttgggagcaagaattggatcctcagttctgcttgatacagttgacatcacggacccaactctggtgtcaatcggagat |
24929869 |
T |
|
| Q |
1093 |
gaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcc |
1163 |
Q |
| |
|
||||||||| | | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
24929868 |
gaagctgtcgttgcagaaggtgttttggttcaaagccatgaggtaaagaatggaattctaagtctccatcc |
24929798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 333 - 508
Target Start/End: Complemental strand, 24930913 - 24930738
Alignment:
| Q |
333 |
gcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagacaacatgtcaacctatggaatggattcaatcagcgtggttaaagcaact |
432 |
Q |
| |
|
|||||||||||||||| |||||| || | | ||||||||| || || |||||| || || |||||||||| || ||||| | ||||||||||||||| |
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|
| T |
24930913 |
gcttatttctgagcagactggaacgccaatcaacaaaatctcagtcactgacaacctgacatcctatggaatcgactcaattggtgtggttaaagcaact |
24930814 |
T |
|
| Q |
433 |
caaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctgcattcaagaattgg |
508 |
Q |
| |
|
||||| || ||||||||||| || |||||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
24930813 |
caaaagctatcagatttcctaggtacaccagttgcagcaatagatgttttcactgcatcatgcattcaagaattgg |
24930738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 24931209 - 24931103
Alignment:
| Q |
46 |
gtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacgtcaggaaaaattagaaggtttgaatgtc |
145 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | || ||||||||| |
|
|
| T |
24931209 |
gtggcagaagaacatggagttgttcttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacatctggaaagatcaagagatttgaatgta |
24931110 |
T |
|
| Q |
146 |
tcaaaca |
152 |
Q |
| |
|
||||||| |
|
|
| T |
24931109 |
tcaaaca |
24931103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 395 - 504
Target Start/End: Complemental strand, 24930566 - 24930457
Alignment:
| Q |
395 |
cctatggaatggattcaatcagcgtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctg |
494 |
Q |
| |
|
|||||||||| || ||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||| || |
|
|
| T |
24930566 |
cctatggaattgactcaattggtgtggttaaagcaactcaaaaactctcggattttcttgggacaccagttgcagcaatagatgttttcactgcatcatg |
24930467 |
T |
|
| Q |
495 |
cattcaagaa |
504 |
Q |
| |
|
|||||||||| |
|
|
| T |
24930466 |
cattcaagaa |
24930457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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