View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_high_18 (Length: 276)
Name: NF18355_high_18
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_high_18 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 353180 - 353440
Alignment:
| Q |
9 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
108 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
353180 |
catgtcatccactccatgaacactagcagtcctatcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
353279 |
T |
|
| Q |
109 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaa |
208 |
Q |
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|||||||||| |||||||||||||||| || ||||||||| || |||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
353280 |
atgcaagactaaacgaatgactcaggtgtgaacatctggtatgcggggtataggcgagcataatagagagactgatagatgcctcggtggctcctgaaaa |
353379 |
T |
|
| Q |
209 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctgtgctc |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
353380 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
353440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 27351865 - 27351605
Alignment:
| Q |
9 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
108 |
Q |
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||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
27351865 |
catgtcatccactccgtgaacactagcagtcctctcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcatgtccccaggccac |
27351766 |
T |
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| Q |
109 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaa |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || |||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27351765 |
atgcaagactccacgaatgactcaggtctgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaa |
27351666 |
T |
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| Q |
209 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctgtctctgatatctgtgctc |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
27351665 |
gcgcagcattctggtccattaaaaaatgatcttgctgctcttgtctctgatatctctgctc |
27351605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 29225108 - 29224847
Alignment:
| Q |
9 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
108 |
Q |
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|
|||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29225108 |
catgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
29225009 |
T |
|
| Q |
109 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaa |
208 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| || |||| | |||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29225008 |
atgcaagactacacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaa |
29224909 |
T |
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| Q |
209 |
gcgcagcattctggtccattaa-aaaatgatctcgctgctcctgtctctgatatctgtgctc |
269 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29224908 |
gtgcagcattctggtccattaaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
29224847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 29338407 - 29338146
Alignment:
| Q |
9 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
108 |
Q |
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|
|||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29338407 |
catgtcatccactccatgaacattagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
29338308 |
T |
|
| Q |
109 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaa |
208 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||| || |||| | |||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29338307 |
atgcaagactacacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaa |
29338208 |
T |
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| Q |
209 |
gcgcagcattctggtccattaa-aaaatgatctcgctgctcctgtctctgatatctgtgctc |
269 |
Q |
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| T |
29338207 |
gtgcagcattctggtccattaaaaaaatgatctcgctgctcctgtctctgatatctctgctc |
29338146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 183571 - 183329
Alignment:
| Q |
9 |
catgtcatccactccatgaacactagcggtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccac |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
183571 |
catgtcatccactccatgaacactagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccac |
183472 |
T |
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| Q |
109 |
atgcaagactccacgaatgactcaggtgcgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaa |
208 |
Q |
| |
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||| |||||||||||||||||||||||| |||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
183471 |
atgtaagactccacgaatgactcaggtgtgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatacctcgatggcttctgaaaa |
183372 |
T |
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| Q |
209 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctg |
251 |
Q |
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| T |
183371 |
gcgcagcattctggtccattaaaaaatgatctcgctgctcctg |
183329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 263
Target Start/End: Original strand, 1949440 - 1949663
Alignment:
| Q |
37 |
gtcctatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtg |
136 |
Q |
| |
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||||||||||||||||||| ||||||| |||| ||| |||||| |||||||| |||||||||||| |||||||||||||| |||| |||||| ||||| |
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| T |
1949440 |
gtcctatcatcatcttccgttgcaccatagtgctcagtccctccatagaaagttggcctgtccccaagccacatgcaagacgccacatatgactgaggtg |
1949539 |
T |
|
| Q |
137 |
cgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatg |
236 |
Q |
| |
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| ||||||||| || ||||||||||| |||| ||| ||||||||||| |||| |||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
1949540 |
tcaacatctggtatgcggggtctaggcgagcattataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatg |
1949636 |
T |
|
| Q |
237 |
atctcgctgctcctgtctctgatatct |
263 |
Q |
| |
|
||| |||||||||||||||||||||| |
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| T |
1949637 |
atcctgctgctcctgtctctgatatct |
1949663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 263
Target Start/End: Complemental strand, 1952974 - 1952755
Alignment:
| Q |
41 |
tatcatcatcttccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctgtccccaggccacatgcaagactccacgaatgactcaggtgcgag |
140 |
Q |
| |
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||||||||||||||| ||||||| |||| |||| |||||| |||||||| || |||||||||||||||||||||||| ||| | |||||| ||||| | |
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|
| T |
1952974 |
tatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccatgtatgactgaggtgtcaa |
1952875 |
T |
|
| Q |
141 |
catctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatgatct |
240 |
Q |
| |
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||||||||| || ||||||||||| |||||||| ||||||||||| |||| |||| ||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1952874 |
catctggtatgcggggtctaggcgagcatcataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatgatcc |
1952778 |
T |
|
| Q |
241 |
cgctgctcctgtctctgatatct |
263 |
Q |
| |
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||||||| ||| |||||||||| |
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| T |
1952777 |
tgctgctcatgtttctgatatct |
1952755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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