View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18355_high_21 (Length: 247)

Name: NF18355_high_21
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18355_high_21
NF18355_high_21
[»] chr4 (7 HSPs)
chr4 (16-156)||(46971884-46972024)
chr4 (82-188)||(6273944-6274050)
chr4 (71-130)||(20743289-20743348)
chr4 (53-136)||(24343478-24343561)
chr4 (192-229)||(46971843-46971881)
chr4 (83-136)||(3144657-3144710)
chr4 (80-124)||(32910549-32910593)
[»] chr5 (7 HSPs)
chr5 (53-130)||(42469192-42469269)
chr5 (53-123)||(36642780-36642850)
chr5 (80-128)||(2577193-2577241)
chr5 (81-136)||(43554520-43554575)
chr5 (74-155)||(18607082-18607164)
chr5 (53-102)||(19820433-19820482)
chr5 (80-136)||(39696004-39696060)
[»] chr6 (8 HSPs)
chr6 (53-136)||(6389714-6389797)
chr6 (81-136)||(12086350-12086405)
chr6 (77-136)||(34446560-34446619)
chr6 (56-124)||(5732527-5732595)
chr6 (53-155)||(10294078-10294181)
chr6 (54-112)||(9027150-9027208)
chr6 (82-136)||(12235524-12235578)
chr6 (85-130)||(26247429-26247474)
[»] chr8 (6 HSPs)
chr8 (80-136)||(35431145-35431201)
chr8 (81-136)||(1676711-1676766)
chr8 (80-190)||(13009444-13009554)
chr8 (53-136)||(39820400-39820483)
chr8 (55-124)||(20873042-20873111)
chr8 (80-136)||(40063949-40064005)
[»] scaffold0199 (1 HSPs)
scaffold0199 (81-136)||(1948-2003)
[»] chr3 (6 HSPs)
chr3 (53-112)||(24205070-24205129)
chr3 (80-133)||(25074787-25074840)
chr3 (80-136)||(15864831-15864887)
chr3 (89-136)||(3730170-3730217)
chr3 (81-136)||(34189426-34189481)
chr3 (80-136)||(8903430-8903485)
[»] chr2 (6 HSPs)
chr2 (53-128)||(10535772-10535847)
chr2 (53-136)||(23354657-23354740)
chr2 (88-135)||(24011042-24011089)
chr2 (82-130)||(12748684-12748732)
chr2 (80-136)||(25544479-25544535)
chr2 (71-155)||(37986768-37986847)
[»] chr7 (5 HSPs)
chr7 (56-128)||(4017807-4017879)
chr7 (53-112)||(43249964-43250023)
chr7 (81-136)||(23751899-23751954)
chr7 (81-130)||(23930218-23930267)
chr7 (80-136)||(29812669-29812725)
[»] chr1 (4 HSPs)
chr1 (82-130)||(42004958-42005006)
chr1 (80-130)||(6573987-6574037)
chr1 (53-130)||(398776-398853)
chr1 (83-136)||(6936405-6936458)
[»] scaffold0007 (1 HSPs)
scaffold0007 (53-112)||(225297-225356)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 46972024 - 46971884
Alignment:
Q  16 atgaaggtttaacctatgaagcatggacccaaacacaaccggacacgacacggatactgatactccgacacggataataaattgagataatgacatattt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46972024 atgaaggtttaacctatgaagcatggacccaaacacaatcggacatgacacggatactgatactccgacacggataataatttgagataatgacatattt 46971925  T
Q  116 tagtgtaatcataggcgtcgtatcgtgttggtgtcagacat 156  Q
    || ||| |||||||| |||||||||| ||||| ||||||||    
T  46971924 tactgttatcataggtgtcgtatcgttttggtatcagacat 46971884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 6273944 - 6274050
Alignment:
Q  82 gacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagacattaacgcatgtctgaccacaggaca 180  Q
    ||||| || ||||| |||||| ||||| ||| ||||||||||| |||| |||||| || |||| ||||||||||||  ||||||||| || |||| ||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccga-cacaagaca 6274042  T
Q  181 cgcctaat 188  Q
    ||||||||    
T  6274043 cgcctaat 6274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 20743348 - 20743289
Alignment:
Q  71 actgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    ||||| || |||||||||||||||| |||||| ||||||||| || ||||||||||||||    
T  20743348 actgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcatagg 20743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 24343478 - 24343561
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||||||  | || || |||||||||||||||| |||||| ||| ||||| || |||||||| ||||| |||||    
T  24343478 accggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgt 24343561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 46971881 - 46971843
Alignment:
Q  192 aagaataatgtttgtg-ttcatagggtttaactaagcac 229  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  46971881 aagaataatgtttgtgcttcatagggtttaactaagcac 46971843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 3144710 - 3144657
Alignment:
Q  83 acacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||| || ||| ||||| ||| ||||||||||||||||| |||||    
T  3144710 acacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgt 3144657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 32910549 - 32910593
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaat 124  Q
    |||||||||||||||| |||||| ||||||||| || ||||||||    
T  32910549 ccgacacggataataatttgagaaaatgacataattcagtgtaat 32910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 42469192 - 42469269
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    |||| |||||||||||||| ||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42469192 accgaacacgacacggataatgacacgccgacacggataataatttgagaaaatgacatattttagtgtaatcatagg 42469269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 36642850 - 36642780
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaa 123  Q
    ||||||||||||||||| ||||| || ||||||| | |||||| |||| | | ||||||||||||||||||    
T  36642850 accggacacgacacggacactgacacgccgacacagttaataatttgaaaaagtgacatattttagtgtaa 36642780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 2577241 - 2577193
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcata 128  Q
    ||||||| |||||||| |||||| ||||||||| |||||||||||||||    
T  2577241 ccgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 43554520 - 43554575
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||| ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  43554520 cgacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 43554575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 18607164 - 18607082
Alignment:
Q  74 gatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagaca 155  Q
    ||||| |||||| ||||||||| |||||| ||| ||||| || | |||||||||||| ||||| || ||||||||||| ||||    
T  18607164 gatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgaca 18607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 19820482 - 19820433
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgaga 102  Q
    ||||||||||||||||| ||||| |||||||||| | |||||| ||||||    
T  19820482 accggacacgacacggacactgacactccgacaccgctaataatttgaga 19820433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 39696060 - 39696004
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||| || ||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  39696060 ccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 39696004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 6389714 - 6389797
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||||||| ||| | || |||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  6389714 accggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 6389797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 12086405 - 12086350
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||||| |||||||||||||||| || ||| |||||||||| |||||    
T  12086405 cgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgt 12086350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 34446560 - 34446619
Alignment:
Q  77 actccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||| |||||||||||||| |||||| ||||||||| || |||||||||||||| |||||    
T  34446560 actctgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgt 34446619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 5732595 - 5732527
Alignment:
Q  56 ggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaat 124  Q
    |||||||||| ||| ||||| || ||||||| | |||||| |||||| ||| |||||||||||||||||    
T  5732595 ggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaat 5732527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 10294078 - 10294181
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtc-gtatcgtgttggtgtca 151  Q
    ||||||||||||||||||||||| |  |||| || | |||||| ||||||||||  ||||||| | |||||| ||| | ||| || |||||||||||||     
T  10294078 accggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  152 gaca 155  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 9027150 - 9027208
Alignment:
Q  54 ccggacacgacacggatactgatactccgacacggataataaattgagataatgacata 112  Q
    |||||||||||||||| ||||| || ||||||| | |||||| |||||||||| |||||    
T  9027150 ccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacata 9027208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 12235578 - 12235524
Alignment:
Q  82 gacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||| | |||| ||||||||| || |||||||||||||| |||||    
T  12235578 gacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgt 12235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 26247429 - 26247474
Alignment:
Q  85 acggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    ||||||||||| || ||| |||||||||||||||| ||||||||||    
T  26247429 acggataataatttaagaaaatgacatattttagtataatcatagg 26247474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 35431201 - 35431145
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  35431201 ccgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgt 35431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 1676711 - 1676766
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||    
T  1676711 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgt 1676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 13009554 - 13009444
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagacattaacgcatgtctgaccacagga 178  Q
    |||||||||||||||| |||||| ||  | ||| ||||||||||||||| | ||||| || |||| |||||||||||   |||| |||| || ||| |||    
T  13009554 ccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgtccga-cacggga 13009456  T
Q  179 cacgcctaatcc 190  Q
    ||||||||||||    
T  13009455 cacgcctaatcc 13009444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 39820400 - 39820483
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||| || || || || | ||| || ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  39820400 accggacacgacacagacaccgacacgctgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 39820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 20873042 - 20873111
Alignment:
Q  55 cggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaat 124  Q
    ||||||||||||||| ||||| || ||||||  |||||||| |||| | ||| ||||| |||||||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaat 20873111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 40063949 - 40064005
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||  ||||||| |||||| ||||||||| || | ||||||||||||||||||    
T  40063949 ccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgt 40064005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 1948 - 2003
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||    
T  1948 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgt 2003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 24205129 - 24205070
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 112  Q
    ||||||||||||||||| ||||| || |||||||||||||||| |||||| |||||||||    
T  24205129 accggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacata 24205070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 25074787 - 25074840
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgt 133  Q
    ||||||| |||||||| |||||| ||||||||| || |||||||||||||||||    
T  25074787 ccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgt 25074840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 15864831 - 15864887
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||||| |||| | ||||| ||| ||||||||||||||||| |||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgt 15864887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 3730217 - 3730170
Alignment:
Q  89 ataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||| |||||||||||||||| || |||||||||||||| |||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgt 3730170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 34189426 - 34189481
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||| |||||||| |||||| |||||||||||| ||||||||| |||| |||||    
T  34189426 cgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgt 34189481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 8903430 - 8903485
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||||  |||||| ||||||||| ||||||||||| ||||| |||||    
T  8903430 ccgacacggataatattttgagaaaatgacata-tttagtgtaattataggtgtcgt 8903485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 10535847 - 10535772
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcata 128  Q
    |||| ||||||||| |||||| |||| ||||||| |||||||| |||||| ||||||||| || ||||||||||||    
T  10535847 accgtacacgacacagatactaatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 23354740 - 23354657
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||| |||||||| || || |  | ||||| |||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  23354740 accggacatgacacggacaccgacatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 23354657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 24011042 - 24011089
Alignment:
Q  88 gataataaattgagataatgacatattttagtgtaatcataggcgtcg 135  Q
    |||||||| |||||| ||||||||| ||||||||||||||||| ||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcg 24011089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 12748684 - 12748732
Alignment:
Q  82 gacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    |||| ||||||||| |||||| ||||||||| || ||||||||||||||    
T  12748684 gacatggataataatttgagaaaatgacatagttcagtgtaatcatagg 12748732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 25544479 - 25544535
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||| ||||||| |||||| ||||| ||| || |||||||||||||| |||||    
T  25544479 ccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgt 25544535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 37986768 - 37986847
Alignment:
Q  71 actgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatcgtgttggtgtcagaca 155  Q
    ||||| || ||||||| |||||||| |||| | ||||| |||||| |||||||||||||     |||||||||||||||| ||||    
T  37986768 actgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcatag-----gtatcgtgttggtgtcggaca 37986847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 4017879 - 4017807
Alignment:
Q  56 ggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcata 128  Q
    |||||||||||||| || || || |||||||||||||||| |||||| || || ||| |||||||||||||||    
T  4017879 ggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcata 4017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 43249964 - 43250023
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 112  Q
    |||||||| |||||||| ||||| || |||||||||||||||| |||||| |||||||||    
T  43249964 accggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacata 43250023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 23751899 - 23751954
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||||||||||||| |||| | ||||| ||| ||||||||||||||||| |||||    
T  23751899 cgacacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgt 23751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 23930218 - 23930267
Alignment:
Q  81 cgacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    ||||||||||| ||| |||||| ||||||||| || ||||||||||||||    
T  23930218 cgacacggatagtaatttgagaaaatgacataattcagtgtaatcatagg 23930267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 29812725 - 29812669
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    ||||| || ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  29812725 ccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 29812669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 42005006 - 42004958
Alignment:
Q  82 gacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcatagg 42004958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 6573987 - 6574037
Alignment:
Q  80 ccgacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    ||||||||||| |||| |||||| ||||| ||| |||||||||||||||||    
T  6573987 ccgacacggatgataatttgagacaatgatataatttagtgtaatcatagg 6574037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 398853 - 398776
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 130  Q
    ||||||||||||||||| ||||| || ||||||| | |||||| |||| | ||| ||||| || |||||||| |||||    
T  398853 accggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatagg 398776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 6936458 - 6936405
Alignment:
Q  83 acacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 136  Q
    |||||||||||||  ||||| ||||||||| || |||||||||||||| |||||    
T  6936458 acacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgt 6936405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 225356 - 225297
Alignment:
Q  53 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 112  Q
    ||||||||||||||||| ||||| || ||||||| |||||||| |||||| |||||||||    
T  225356 accggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacata 225297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University