View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_high_5 (Length: 402)
Name: NF18355_high_5
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 38311402 - 38311763
Alignment:
| Q |
11 |
atcatcaatggaaactttgttacacttacacactacccatatatcaattaaccaaactttggctgatagattgggttcgtcacataattaaaaagtaaac |
110 |
Q |
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| T |
38311402 |
atcatcaatggaaactttgttacacttacacactacccatatatcaattaaccaaactttggctgatagattgggttcgtcacataattaaaaagtaaac |
38311501 |
T |
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| Q |
111 |
aaggttcattacaatgttagagagttgatggactgataaatcctaataaggtttggaatgcttatcaatatttagtatgtgcgtaaattcaatcgttagg |
210 |
Q |
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| T |
38311502 |
aaggttcattacaatgttagagagttgatggactgataaatcctaacaaggtttggaatgcttatcaatatttagtatgtgcgtaaattcaatcgttagg |
38311601 |
T |
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| Q |
211 |
attttctagaataaaaatatgaattgaatcttacaaaatataaaattgaatcgataaactaaagccttttccggatatattcaaggctcaacgtgcattc |
310 |
Q |
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| T |
38311602 |
attttctagaataaaaatatgaattgaatcttacaaaatataaaattgaatcgataaactaaagccttttccggatatattcaaggctcaacgtgcattc |
38311701 |
T |
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| Q |
311 |
ttcaagctgaactcacagccattcacaaaggcctctatctagcagtaagcatgggagttgat |
372 |
Q |
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| T |
38311702 |
ttcaagctgaactcacagccattcacaaaggcctctatctagcagtaagcatgggaattgat |
38311763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 38311350 - 38311386
Alignment:
| Q |
14 |
atcaatggaaactttgttacacttacacactacccat |
50 |
Q |
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| T |
38311350 |
atcaatggaaactttgttacacttacacaccacccat |
38311386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 40730638 - 40730675
Alignment:
| Q |
301 |
acgtgcattcttcaagctgaactcacagccattcacaa |
338 |
Q |
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| T |
40730638 |
acgtgcattcttctagttgaactcacagccattcacaa |
40730675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 50455890 - 50455985
Alignment:
| Q |
277 |
ttttccggatatattcaaggctcaacgtgcattcttcaagctgaactcacagccattcacaaaggcctctatctagcagtaagcatgggagttgat |
372 |
Q |
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| T |
50455890 |
ttttccggatatattccagcctctacgtgcatcctgcacgcggaactcacaaccattcataaaggcctctctctagcagcaagcatgggaattgat |
50455985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 43300216 - 43300265
Alignment:
| Q |
292 |
caaggctcaacgtgcattcttcaagctgaactcacagccattcacaaagg |
341 |
Q |
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| T |
43300216 |
caagactcaacgtgcattcttctcgctgagctcacagccattcccaaagg |
43300265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 3883589 - 3883684
Alignment:
| Q |
277 |
ttttccggatatattcaaggctcaacgtgcattcttcaagctgaactcacagccattcacaaaggcctctatctagcagtaagcatgggagttgat |
372 |
Q |
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| T |
3883589 |
ttttccggatacataccagcctctacgtgcatcctgcacacggaactcacagccattcataaaggcttctctctagcagcaagcatgggaattgat |
3883684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 11587630 - 11587581
Alignment:
| Q |
277 |
ttttccggatatattcaaggctcaacgtgcattcttcaagctgaactcac |
326 |
Q |
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| T |
11587630 |
tttttcggatttattcaagcctcaacctgcattcttcaagctgagctcac |
11587581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 28145823 - 28145879
Alignment:
| Q |
277 |
ttttccggatatattcaaggctcaacgtgcattcttcaagctgaactcacagccatt |
333 |
Q |
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| T |
28145823 |
ttttccggatttatacaagactctacgtgcatcctgcacgctgaactcacagccatt |
28145879 |
T |
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