View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_high_6 (Length: 399)
Name: NF18355_high_6
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 48017586 - 48017959
Alignment:
| Q |
11 |
cagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaa-ctggaatgaaagaaatagtg |
109 |
Q |
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| T |
48017586 |
cagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaaactggaatgaaagaaatagtg |
48017685 |
T |
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| Q |
110 |
attatcacgagtttaatataatcatttgatgatcacgagcattgtggattgttgccaggaccaccatagtaaaagtatgtgccccatttgttgttgtagg |
209 |
Q |
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| T |
48017686 |
atgatcaccagtttaatataatcatttgatgatcacgagcattgtggattgttgccagggccaccatagtaaaagtatgtgccccatttgttgttgtagg |
48017785 |
T |
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| Q |
210 |
agctcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaa |
309 |
Q |
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| T |
48017786 |
agctcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcggaggtgagactgttgtcggtgtctacgatctcaaggttcctgaa |
48017885 |
T |
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| Q |
310 |
gtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattgg |
383 |
Q |
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| T |
48017886 |
gtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggccattgg |
48017959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 35409829 - 35409744
Alignment:
| Q |
293 |
atctcaaggttcctgaagtagcttgcttttccaaagccatcttcagcaaagtggccggaacccatttgagtggaggtgtgttggcc |
378 |
Q |
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| T |
35409829 |
atctcaaggttccgaaagtagcttgcttttccgaaaccatcctcggcaaagtggccggaacccatctgagtggaggtgtgtcggcc |
35409744 |
T |
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