View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_high_9 (Length: 376)
Name: NF18355_high_9
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 42126021 - 42125670
Alignment:
| Q |
17 |
tgatatttatttattttttctttggtttcagaatgcagtgttgcttgttaccatgaccaaaaccgagtctgatgctatataccattttcttgggatttat |
116 |
Q |
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| T |
42126021 |
tgatatttatttattttttctttggtttcagaatgcagtgttgcttgttactatgaccaaaaccgagtctgatgctatataccattttcttgggatttat |
42125922 |
T |
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| Q |
117 |
cttgttgcctttgttagttcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgttt |
216 |
Q |
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| T |
42125921 |
cttgttgcctttgttagttcccttgctgcagctattacttacttcatgtatacatggttcttccaaaaacctgcttcaatccaaagcttttcatttgttt |
42125822 |
T |
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| Q |
217 |
gcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcctttgccatttcatt |
316 |
Q |
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| T |
42125821 |
gcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcctttgccatttcatt |
42125722 |
T |
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| Q |
317 |
tacatgtgcttacttgcttcatggtctcatactcacctctctcacaggttct |
368 |
Q |
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| T |
42125721 |
tacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttct |
42125670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 361
Target Start/End: Complemental strand, 24929134 - 24928976
Alignment:
| Q |
203 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcc |
302 |
Q |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcccatcaaaccccatcacc |
24929035 |
T |
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| Q |
303 |
tttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcac |
361 |
Q |
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||||||||| ||||||| || ||||||||||| ||||| ||||||| | ||||||| |
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| T |
24929034 |
tttgccattacatttaccatcgcctacttgcttcacggtctaatactcatcgctctcac |
24928976 |
T |
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