View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18355_low_16 (Length: 304)

Name: NF18355_low_16
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18355_low_16
NF18355_low_16
[»] chr4 (1 HSPs)
chr4 (18-304)||(34096918-34097204)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 34096918 - 34097204
Alignment:
Q  18 aaaatagttcccaagctaaagcatcacacctggtattataaatcagatgctttgtttttatgtgagtcattagtgcgcattattaaagttgagaaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  34096918 aaaatagttcccaagctaaagcatcacacctggtattataaatcaaatgctttgtttttatgtgagtccttagtgcacattattaaagttgagaaatttc 34097017  T
Q  118 agtacttgtcgagctttgataactgttttgttgtagatgttcgaaagggatggtggtatagcccttttatggcataattctttcaattgcaatgttgtag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34097018 agtacttgtcgagctttgataactgttttgttgtagatgttcgaaagggatggtggtatagcccttttatggtataattctttcaattgcaatgttgtag 34097117  T
Q  218 attattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtatttatcatttcatagggtactacggttatcctagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  34097118 attattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtgtttatcgtttcatagggtactacggttatcctagt 34097204  T

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