View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18355_low_17 (Length: 303)
Name: NF18355_low_17
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 2572670 - 2572383
Alignment:
| Q |
1 |
cgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagcatctgcatagtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2572670 |
cgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacaagatggctttgccaagagcatctgcatagtcg |
2572571 |
T |
|
| Q |
101 |
taattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572570 |
taattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatca |
2572471 |
T |
|
| Q |
201 |
acaaactgcacctcatgatggttctattaagtttctaagtctgcatgatattcaacgaaactttctggtatttatagtaggaaaaaat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2572470 |
acaaactgcacctcatgatggttctattaagtttctaagtctgcatgatattcaactaaactttctggtatttatagtaggaaaaaat |
2572383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 2562138 - 2561919
Alignment:
| Q |
5 |
tctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagcatctgcatagtcgtaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2562138 |
tctcccctccacttcactctttggtctttaggcaatttccctgagcgttgtccttcaaaaaacaagattgctttgccaagagcatctgcatagttgtaac |
2562039 |
T |
|
| Q |
105 |
tagccgaggaatttgtactaatgaattcatcatccgttatggctaataatcc---attccaactacccatgacaaataacaagatcaaactattgatcaa |
201 |
Q |
| |
|
| | |||||| || ||||||| ||||| |||||| |||| ||||||| || |||| ||||| |||| |||| ||||||| |||| | | ||||| |
|
|
| T |
2562038 |
ttgatgaggaacttttactaattaattcctcatccattattgctaatataccattattcttactactcatggcaaaccacaagattaaaccacttatcaa |
2561939 |
T |
|
| Q |
202 |
caaactgcacctcatgatgg |
221 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
2561938 |
caaactgcaccccatgatgg |
2561919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University