View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_low_21 (Length: 269)
Name: NF18355_low_21
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 9233295 - 9233048
Alignment:
| Q |
13 |
gtgagaagaagagatgtgaagataaaatgaagtgttgaatgagtgtatataaagttagggtgttaaaatatcatagttagaaaaattaggataagtaatt |
112 |
Q |
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| T |
9233295 |
gtgataagaagagagatgaagataaaatgaagtgttgaatgagtgtatgtaaagttagggtgttaaaatatcatagttagaaaaattaggataagtaatt |
9233196 |
T |
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| Q |
113 |
aa------aaagcttaaccactgcacaagacatgaccttaataatcgatg-tttatgagtaagactattcttaagttgaacgctatagaccttaataata |
205 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9233195 |
aattataaaaagcttagccactgcacaagacatgaccttaataatcgatgctttatgagtaagactattcttaagttgaaagctatagaccttaataata |
9233096 |
T |
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| Q |
206 |
gctaatgttgccaaaaaccctaacatgcttatatgctacgtcaatatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9233095 |
gctaatgttgccaaaaaccctaacatgcttatatgctacgtcaatatt |
9233048 |
T |
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