View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_low_22 (Length: 250)
Name: NF18355_low_22
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 36425168 - 36424948
Alignment:
| Q |
12 |
tattgaaagaatcactgaattatttattataacaggaaggnnnnnnnnncatagtattgatagaaagttcacatgttcaagccattatcataatccttaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36425168 |
tattgaaagaatcactgaattatttattataacaggaaggaaaaaaaaa-acagtattgatagaaagttcacatgttcaagccattatcgtaatccttaa |
36425070 |
T |
|
| Q |
112 |
gaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgctag |
211 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425069 |
gaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccagagccaagacattgtcatcaatggtagagttaaacaatgtgctag |
36424970 |
T |
|
| Q |
212 |
caattgaaatagttccagcatt |
233 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36424969 |
caattgaaatagttccagcatt |
36424948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 66 - 233
Target Start/End: Complemental strand, 36428088 - 36427921
Alignment:
| Q |
66 |
tattgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagcc |
165 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36428088 |
tattgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaacgtctgaactgttgcaacatcagtcttgaaagcc |
36427989 |
T |
|
| Q |
166 |
aaagccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcatt |
233 |
Q |
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| T |
36427988 |
aaagccaagacattgtcatcaatggtagaattaaacaatgtgctagcaattgaaatagttccagcatt |
36427921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 36421589 - 36421424
Alignment:
| Q |
68 |
ttgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaa |
167 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
36421589 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccag |
36421490 |
T |
|
| Q |
168 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcatt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421489 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcatt |
36421424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 19144266 - 19144391
Alignment:
| Q |
109 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
208 |
Q |
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||||||| ||| |||||||||||| | || | || | ||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||| | |
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| T |
19144266 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19144365 |
T |
|
| Q |
209 |
tagcaattgaaatagttccagcattg |
234 |
Q |
| |
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|| | ||||||||||||||||||| |
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| T |
19144366 |
cagggagtgaaatagttccagcattg |
19144391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 19148727 - 19148602
Alignment:
| Q |
109 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
208 |
Q |
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||||||| ||| |||||||||||| | || | || | ||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||| | |
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| T |
19148727 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19148628 |
T |
|
| Q |
209 |
tagcaattgaaatagttccagcattg |
234 |
Q |
| |
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|| | ||||||||||||||||||| |
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| T |
19148627 |
cagggagtgaaatagttccagcattg |
19148602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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