View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18355_low_24 (Length: 247)
Name: NF18355_low_24
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_24 |
 | |
|
| [»] scaffold0374 (1 HSPs) |
| | |
|
| [»] scaffold0679 (1 HSPs) |
| | |
|
| [»] scaffold0545 (1 HSPs) |
| | |
|
| [»] scaffold0873 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0162 (1 HSPs) |
| | |
|
| [»] scaffold0258 (1 HSPs) |
| | |
|
| [»] scaffold0367 (1 HSPs) |
| | |
|
| [»] scaffold0292 (2 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 15208881 - 15209053
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
15208881 |
attaccggtgcgttgacatttgtcacatttagaaataaatagatgcacatctttgaaaagtgatggccaccagaaaccagagtgaaggattttgaaagaa |
15208980 |
T |
|
| Q |
100 |
atcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcatttt |
172 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
15208981 |
gtcttttgagtactggcgtggccaccataagaagaagagtgacaatggtttagaatactacttacctcgtttt |
15209053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 41845278 - 41845119
Alignment:
| Q |
89 |
ttttaaaagaaatcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc--------tataata |
180 |
Q |
| |
|
|||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
41845278 |
ttttgaaagaagtattttgagtactgacgtggccaccataagaagaaaagtgacaatggtttagaatactacttacctcgttttcaagaatgctataata |
41845179 |
T |
|
| Q |
181 |
gagtgaaataaacaacttattttattcacatttcacaagtttattggttttggtcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41845178 |
gagtgaaataaacaacttattttattcacatttcacaagtttattggttttggtcctttg |
41845119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 41845379 - 41845320
Alignment:
| Q |
13 |
ttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccacca |
72 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
41845379 |
ttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagggatggccacca |
41845320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 41845328 - 41845292
Alignment:
| Q |
118 |
tggccaccataagaagaagagtgacaatgatttagaa |
154 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41845328 |
tggccaccataagaagaagagtgacaatggtttagaa |
41845292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8016 - 7843
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
8016 |
attaccggtgcgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagagtgaaggattttgaaagaa |
7917 |
T |
|
| Q |
100 |
atcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| |
|
|
| T |
7916 |
gtcttttgagtactagcgtggccaccataagaagaagattggcaatggtttagaatattacttacctcattttc |
7843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 23629191 - 23629028
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
23629191 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagagtgaaggattttgaaagaagtcttttgag |
23629092 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||||| |
|
|
| T |
23629091 |
tattggcgtggcctccataagaagaagagtggaaatggtttagaatactacttacctcgttttc |
23629028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 23645736 - 23645573
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
23645736 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagattgaaggattttgaaagaagtcttttgag |
23645637 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| | ||||||||||||||||||| |||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
23645636 |
tactagcgtggccaccataagaagagcagtggcaatggtttagaatactacttacctcgttttc |
23645573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 17588235 - 17588067
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
17588235 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
17588136 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
17588135 |
ttgtgtactggcgtggccgccataagaagaggagtgacaatgagttagaatactacttacctcgttttc |
17588067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 22662910 - 22662742
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
22662910 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
22662811 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
22662810 |
ttgtgtactggcgtggccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
22662742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0679 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0679
Description:
Target: scaffold0679; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 5826 - 5651
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcaca--tctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaag |
97 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| ||||||||| ||||| |||| | ||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
5826 |
attaccggtgcgttgacatttgtcacatttagaaataaatagatgcacacatctttgaaaagtgttggccaccaaaaaccagagtgaaggattttgaaag |
5727 |
T |
|
| Q |
98 |
aaatcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| ||||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5726 |
aagtcttttgagcactggcgtggccaccataagaagaagagtgacaatggtttagaatactacttacctcattttc |
5651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0545 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0545
Description:
Target: scaffold0545; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 11071 - 11233
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
11071 |
cggtgcgttgacatttgtcacatttagagataaagaggtgcacatctttaaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
11170 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctc |
167 |
Q |
| |
|
||| ||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
11171 |
ttgtgtactggcgtggccaccataagaagaagagtgacaatgagttagaatactacttacctc |
11233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 10862195 - 10862033
Alignment:
| Q |
12 |
gttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| ||||||| || |
|
|
| T |
10862195 |
gttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtgt |
10862096 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
10862095 |
actggcgtggccaccataagaagaggagtgacaatgagttagaatactacttacctcgttttc |
10862033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 10648232 - 10648070
Alignment:
| Q |
12 |
gttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| ||||||| || |
|
|
| T |
10648232 |
gttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtgt |
10648133 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| || ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
10648132 |
actggcgtggccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
10648070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 18250344 - 18250172
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
18250344 |
attaccggtgcgttgacatttgtcacatttagaaa-aaagagatgcacatctttgaaaagtgatggccaccagaaaccaaactgaagaattttgaaagag |
18250246 |
T |
|
| Q |
100 |
atcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|||| || | | | |||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
18250245 |
gtcttatgtgcacttgtgtggccaccataagaagaggagtggcaatggtttagaatactacttacctcgttttc |
18250172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 20404654 - 20404492
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||| |||| |
|
|
| T |
20404654 |
cggtgcgttgacatttgtcacatttagagataaagaggtgcacatctttaaaaagtgatggccaccagaaaccagagtgaagaattttgaaagaagtctt |
20404555 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctc |
167 |
Q |
| |
|
||| ||| || ||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
20404554 |
ttgtgtactggcgtggccaccataagaagaggagtgacaatgagttagaatactacttacctc |
20404492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 17096989 - 17097157
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
17096989 |
cggtgcgttgacatttgtcacatttagagataaagagatgtacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
17097088 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17097089 |
ttgtgtactggcgtggccgccataagaagaggagtgacaatgagttagaatactacttacctcattttc |
17097157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0873 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0873
Description:
Target: scaffold0873; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 3841 - 4014
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
3841 |
attaccggtgcgttgacatttcacacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagagtgaaagattttgaaagaa |
3940 |
T |
|
| Q |
100 |
atcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
3941 |
gtcttttgagtactgtcgtggccaccataagaataagagtggcaatggtttagaatactacttacctcgttttc |
4014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 55512598 - 55512435
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
55512598 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtg |
55512499 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
55512498 |
tactggcgtggccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
55512435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 15559332 - 15559500
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
15559332 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
15559431 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
15559432 |
ttgtgtactggcgtggccgccataagaagaggagtgacaatgagttagaatactacttacctcgttttc |
15559500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 18856920 - 18857088
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| |||||| |||| |
|
|
| T |
18856920 |
cggtgcgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
18857019 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || |||| |||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
18857020 |
ttgtgtactggcgtgaccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
18857088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 37940241 - 37940073
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
37940241 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
37940142 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
37940141 |
ttgtgtactggcgtggccgccataagaagaggagtgacaatgagttagaatactacttacctcgttttc |
37940073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 11864632 - 11864469
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||| ||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
11864632 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccataaaccagaatgaagaattttgaaagaagtcttttgtg |
11864533 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
11864532 |
tactggcgtggccaccataagaagaggagtggcaatgggttagaatactacttacctcattttc |
11864469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 11945247 - 11945078
Alignment:
| Q |
5 |
tcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatct |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||||| ||| ||||| ||||| |||||| ||| |
|
|
| T |
11945247 |
tcggtgcgttgacatttgtcacatttagaaataaacgaatgcacatctttgaagagtgatggccaccagaaaccagaatgaagaattttgaaagaagtct |
11945148 |
T |
|
| Q |
104 |
tttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|||| ||| || ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
11945147 |
tttgtgtactggcgtggccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
11945078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 16451125 - 16451293
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| |||||| |||| |
|
|
| T |
16451125 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
16451224 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || |||| || |||||||| || ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
16451225 |
ttgtgtactggcgtgaccgccataagaggaggagtggcaatgagttagaatactacttacctcgttttc |
16451293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 13062845 - 13062763
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggatttt |
92 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
13062845 |
cgttgacatttatcacatttagaaataaagagatgcacatctttgaaaagtgatggccactagaaaccagagtgaaggatttt |
13062763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 22241641 - 22241473
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| |||| |
|
|
| T |
22241641 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtctt |
22241542 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
22241541 |
ttgtgtactggcgtggccgccataagaagaggagtgacaatgagttagaatactacttacctcgttttc |
22241473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 29585338 - 29585175
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| |||||| |||||| | |
|
|
| T |
29585338 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagccttttgtg |
29585239 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || | || |||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
29585238 |
tactggcatgaccaccataagaagaggagtggcaatgggttagaatactacttacctcgttttc |
29585175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 15852368 - 15852536
Alignment:
| Q |
6 |
cggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||| |||| | ||||||||||||| ||| ||||| ||||| ||||| |||| |
|
|
| T |
15852368 |
cggtgcgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtaacggccaccagaaaccagaatgaagaattttgaaagatgtctt |
15852467 |
T |
|
| Q |
105 |
ttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||| ||| || ||||||| |||||||| || ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
15852468 |
ttgtgtactggcgtggccgccataagaggaggagtggcaatgagttagaatactacttacctcgttttc |
15852536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 25624031 - 25623869
Alignment:
| Q |
12 |
gttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
|||||||||| ||||||| ||||| || |||||| ||||||| |||| |||||||||||||||| ||| |||| |||| ||||| ||||||| || |
|
|
| T |
25624031 |
gttgacatttttcacattaagaaacaaagagatgcgcatctttgaaaagtgatggccaccagaaacgagactgaaattttttgaaagatgtcttttgtgt |
25623932 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| | |||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
25623931 |
acttgtgtggccaccataagaagaggagtggcaatggtttagaatactacttacctcgttttc |
25623869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 25647819 - 25647926
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||| ||| |||| ||||| ||||| |||||| |
|
|
| T |
25647819 |
attaccggtgcgttgacatttgtcacatttagaaacaaacagatgcacatctttgaaaagtgatggccaccaaaaaccagattgaagaattttgaaagaa |
25647918 |
T |
|
| Q |
100 |
atcttttg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
25647919 |
gtcttttg |
25647926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 20710282 - 20710119
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
20710282 |
cgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtg |
20710183 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
20710182 |
tactggcgtggccaccataagaagaggagtggcaatgggttagaatactacttacctcgttttc |
20710119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 23909261 - 23909098
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
23909261 |
cgttgacatttgtcacatttagagataaagagatgcacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtg |
23909162 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || ||||||| ||||||||||| ||||| |||||| ||||||| ||||||| ||| ||||| |
|
|
| T |
23909161 |
tactggcgtggccgccataagaagaggagtggcaatgagttagaatactacttatctcgttttc |
23909098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 19364156 - 19364000
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaacagagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| ||||| |||||| ||||||| || |
|
|
| T |
19364156 |
cgttgacttttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaa------tgaagaattttgaaagaagtcttttgtgt |
19364063 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| || ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
19364062 |
actggcgtggccaccataagaagaggagtggcaatgggttagaatactacttacctcgttttc |
19364000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 208451 - 208622
Alignment:
| Q |
3 |
tatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaa-acagagtgaaggattttaaaagaaat |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| || | || || ||||| |||||| | |
|
|
| T |
208451 |
tatcggtgcgttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccaccagaagccataatggagaattttgaaagaagt |
208550 |
T |
|
| Q |
102 |
cttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
208551 |
cttttgtgtactggcgtggccaccataagaagaggagtggcaatgagttagaatactacttacctcgttttc |
208622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 32556 - 32717
Alignment:
| Q |
13 |
ttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgagta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||| ||| ||||| ||||| |||||| ||||||| ||| |
|
|
| T |
32556 |
ttgacatttgtcacatttagaaataaagagatgcacatctttgaaaagtgatggccacccgaaacgagaatgaagaattttgaaagaagtcttttgtgta |
32655 |
T |
|
| Q |
112 |
gtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
32656 |
ctagcgtggccaccataagaagaggagtggcaatgggttagaatactacttacctcgttttc |
32717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0258 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 24541 - 24703
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
24541 |
cgttgacatttgtcacatt-agaaataaagagatggacatctttgaaaagtgatggccaccagaaaccagaatgaagaattttgaaagaagtcttttgtg |
24639 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| | ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
24640 |
tacttgcgtggccaccataagaagaggagtggcaatgggttagaatactacttacctcgttttc |
24703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0367 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0367
Description:
Target: scaffold0367; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10610 - 10437
Alignment:
| Q |
1 |
attatcggtacgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaa |
99 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||| || ||||||||||| || |||| |||||| |||| |||| || ||||| ||||| ||||| |
|
|
| T |
10610 |
attaccggtgcgttgacattggtcacatttagaaacaaagagatgcacatcattgaaaagtgatggcaaccaaaaacgagcttgaagaattttgaaagag |
10511 |
T |
|
| Q |
100 |
atcttttgagtagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
10510 |
gtcttttgagtactggcgtggccaccataagaagaggagtggcaatggtttagaatactacttacctcgttttc |
10437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0292 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0292
Description:
Target: scaffold0292; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 2379 - 2539
Alignment:
| Q |
12 |
gttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||||| |||||||||| |
|
|
| T |
2379 |
gttgacatttgtcacatttagaaacaaagagatgcacatcttt-gaaagtgatagccaccagaaaccagattgaaggattttgaaagaagtcttttgagt |
2477 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| || ||||| |||||||| |||| || || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
2478 |
actg-cgtgggcaccataaaaagaggaatggcaatggtttagaatactacttacctcgttttc |
2539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0292; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 9416 - 9576
Alignment:
| Q |
12 |
gttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaa-cagagtgaaggattttaaaagaaatcttttgagt |
110 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||| ||| ||||||||||| |||| ||||||||||| |||||| |||||||||| |
|
|
| T |
9416 |
gttgacatttgtcacatttagaaacaaagagatgcacatcttt-gaaagtgatagccaccagaaaccagattgaaggattttgaaagaagtcttttgagt |
9514 |
T |
|
| Q |
111 |
agtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
| || ||||| |||||||| |||| || || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
9515 |
actg-cgtgggcaccataaaaagaggaatggcaatggtttagaatactacttacctcgttttc |
9576 |
T |
|
Back To:
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Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 170201 - 170038
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac-agagtgaaggattttaaaagaaatcttttgag |
109 |
Q |
| |
|
|||||||||| |||||| ||| ||| || |||||||||| |||||||| ||||||||| |||||| ||| ||||| ||||| |||||| ||||||||| |
|
|
| T |
170201 |
cgttgacattggtcacacttataaacaaagagatgcacatgtttaaaaagtgatggccactagaaacgagattgaagaattttgaaagaagtcttttgag |
170102 |
T |
|
| Q |
110 |
tagtgacgtggccaccataagaagaagagtgacaatgatttagaattctacttacctcattttc |
173 |
Q |
| |
|
|| || |||| |||||||| ||||||||| ||||||| |||||||| ||||||||| ||||| |
|
|
| T |
170101 |
tactggcgtgaccaccataggaagaagagagacaatggtttagaatgtcacttacctcgttttc |
170038 |
T |
|
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Target: scaffold0328 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 2669 - 2735
Alignment:
| Q |
11 |
cgttgacatttgtcacatttagaaataataagatgcacatctttaaaaaaggatggccaccagaaac |
77 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
2669 |
cgttgacatttgtcacatttagaaacaaagagatgcacgtctttgaaaagtgatggccaccagaaac |
2735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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