View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_low_4 (Length: 503)
Name: NF18355_low_4
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 21 - 489
Target Start/End: Original strand, 52422917 - 52423385
Alignment:
| Q |
21 |
atcatttataatgcaagttacttatattgggagacactgcatgttcaattctaaattacaacagaaatccaatattatgtgttcccacgagtgcttttgt |
120 |
Q |
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| T |
52422917 |
atcatttataaggcaagttacttatattgggagacactgcatattcaattctaaattacaacagaaatccaatattatgtgttcccacgagtgcttttgt |
52423016 |
T |
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| Q |
121 |
ttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttct |
220 |
Q |
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| T |
52423017 |
ttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttct |
52423116 |
T |
|
| Q |
221 |
atcatactgggtaggtctgagtagagcaacttcttccaattctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatag |
320 |
Q |
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| T |
52423117 |
atcatactgggtaggtctgagtagagcaacttcttccaattctgtgaatagaagatgacaacataatcattgatcatttaaattattataaaattgatag |
52423216 |
T |
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| Q |
321 |
agattagcatctattccagttccttagattacaagtttccaagtcagtgnnnnnnncctaaatctccaataaagtgcagcgctgttggttctttgcaggc |
420 |
Q |
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| T |
52423217 |
agattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaaaacctaaatctccaataaagtgcagcgctgttggttctttgcaggc |
52423316 |
T |
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| Q |
421 |
tggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggattcgtctctg |
489 |
Q |
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| T |
52423317 |
tggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaaggggattcgtctctg |
52423385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 141 - 365
Target Start/End: Original strand, 42715940 - 42716166
Alignment:
| Q |
141 |
aaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctg |
239 |
Q |
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| T |
42715940 |
aaaattgggtc-aatttaatcaccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctg |
42716038 |
T |
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| Q |
240 |
agtagagcaacttcttcca-attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tcc |
337 |
Q |
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||||||| |||||||| || || |||| ||||||||||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| ||| |
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| T |
42716039 |
agtagagaaacttcttacagtttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctcc |
42716138 |
T |
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| Q |
338 |
agttccttagattacaagtttccaagtc |
365 |
Q |
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| T |
42716139 |
aattccttagattacaagtttccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42715493 - 42715529
Alignment:
| Q |
21 |
atcatttataatgcaagttacttatattgggagacac |
57 |
Q |
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| T |
42715493 |
atcatttataatgcaaattacttatattgggagacac |
42715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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