View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18355_low_5 (Length: 470)
Name: NF18355_low_5
Description: NF18355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18355_low_5 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 256 - 470
Target Start/End: Complemental strand, 26147757 - 26147543
Alignment:
| Q |
256 |
aatagtgttacaaaacaatgataacacaaatatgtcaactgaatgtgataaattataattgtagaaacactaactcaagttactttatgcagcttcttca |
355 |
Q |
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| T |
26147757 |
aatagtgttacagaacaatgataacacaaatatgtcaactgaatgtgataaattataatcgtagaaacacaaactcaagttactttatgcagcttcttca |
26147658 |
T |
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| Q |
356 |
gatgatacaacaacttcttcagatgatgtagcagaagctggttttttaatcacaagaaatttttcaggtagcgtatataatggtccatcagcagcaacac |
455 |
Q |
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| T |
26147657 |
gatgatacaacaacttcttcagatgatgtagcagaagctggttttctaatcacaagaaatttttcaggtagcgtatataatggtccatcagcagcaacaa |
26147558 |
T |
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| Q |
456 |
tgtgatatgcaaggc |
470 |
Q |
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| T |
26147557 |
cttgatatgcaaggc |
26147543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 26147894 - 26147753
Alignment:
| Q |
14 |
atcaacactagataataattttcaaagttctgaaaggattgatcttagcaatgtgggcagttgcataaatttgataacaattcaatggcaagatcgtgcc |
113 |
Q |
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| T |
26147894 |
atcaacactagataataattttcaaagttctgaaaggattgatcttagcaatgtgggcagttgcataaatttgataacaattcaatggcaagatcgtgcc |
26147795 |
T |
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| Q |
114 |
atcttcaacagtgcagaaaaagaaatccaatgtaaataaatag |
156 |
Q |
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| T |
26147794 |
atcttcaacagtgcagaaaaagaaat-caatgtaaataaatag |
26147753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 369 - 470
Target Start/End: Original strand, 33872359 - 33872465
Alignment:
| Q |
369 |
cttcttcagatgatgtagcagaagctggttttttaatcac-----aagaaatttttcaggtagcgtatataatggtccatcagcagcaacactgtgatat |
463 |
Q |
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| T |
33872359 |
cttcttcagatgatgcagcagaatctggttttctaatcacctcacaggaaatttttcaggtagcgtatataacggtccatcagcagcaacaccttgatat |
33872458 |
T |
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| Q |
464 |
gcaaggc |
470 |
Q |
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| T |
33872459 |
gcaaggc |
33872465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 33872261 - 33872339
Alignment:
| Q |
229 |
aaaatcgtcaaagttaatactagacagaatagtgttacaaaaca---atgataacacaaatatgtcaactgaatgtgat |
304 |
Q |
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| T |
33872261 |
aaaatcctcaaagttaacaccagaaagaatagtgttacaaaacaatgatgataacataaatttgtcaactgaatgtgat |
33872339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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