View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_high_10 (Length: 343)

Name: NF18356_high_10
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18356_high_10
NF18356_high_10
[»] chr3 (1 HSPs)
chr3 (255-325)||(53553625-53553695)
[»] chr1 (1 HSPs)
chr1 (280-325)||(32774127-32774172)
[»] chr8 (1 HSPs)
chr8 (266-325)||(9936436-9936495)
[»] chr7 (2 HSPs)
chr7 (266-325)||(42460087-42460146)
chr7 (285-326)||(21245198-21245239)
[»] chr6 (1 HSPs)
chr6 (266-325)||(1034339-1034399)
[»] chr5 (2 HSPs)
chr5 (280-326)||(36989068-36989114)
chr5 (280-325)||(40296118-40296163)
[»] chr2 (3 HSPs)
chr2 (280-325)||(13016050-13016095)
chr2 (272-325)||(33858646-33858699)
chr2 (278-326)||(11272569-11272617)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 53553625 - 53553695
Alignment:
Q  255 atagcatatccaaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    |||||| ||||||||  |||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  53553625 atagcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcata 53553695  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 32774127 - 32774172
Alignment:
Q  280 ttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcata 32774172  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 9936495 - 9936436
Alignment:
Q  266 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    |||||||||| || ||||||| || |||||||||| |||||| |||||||||||||||||    
T  9936495 aaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcata 9936436  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 42460087 - 42460146
Alignment:
Q  266 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    ||||| |||| || ||||||| || ||||||||||||||||||||||||||| |||||||    
T  42460087 aaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcata 42460146  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 21245198 - 21245239
Alignment:
Q  285 ctcctttttaggcactctctaggattccaagtccactcatag 326  Q
    ||||| ||||||||||||||||||||||| | ||||||||||    
T  21245198 ctcctctttaggcactctctaggattccacgaccactcatag 21245239  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 1034399 - 1034339
Alignment:
Q  266 aaaagccagccccgttcatctcctt-tttaggcactctctaggattccaagtccactcata 325  Q
    ||||| |||| || ||||||||| | |||||||||||| ||||||||||||||||||||||    
T  1034399 aaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcata 1034339  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 36989114 - 36989068
Alignment:
Q  280 ttcatctcctttttaggcactctctaggattccaagtccactcatag 326  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| ||||    
T  36989114 ttcatctccttgttagacactctctaggattccacgtccacttatag 36989068  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 40296118 - 40296163
Alignment:
Q  280 ttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcata 40296163  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 13016050 - 13016095
Alignment:
Q  280 ttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    ||||||| || || ||||||||||| ||||||||||||||||||||    
T  13016050 ttcatcttctattaaggcactctctcggattccaagtccactcata 13016095  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 33858646 - 33858699
Alignment:
Q  272 cagccccgttcatctcctttttaggcactctctaggattccaagtccactcata 325  Q
    ||||| ||||||||| || ||||| || |||| |||||||||||||||||||||    
T  33858646 cagccacgttcatcttctatttagacattctcgaggattccaagtccactcata 33858699  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 11272617 - 11272569
Alignment:
Q  278 cgttcatctcctttttaggcactctctaggattccaagtccactcatag 326  Q
    ||||||||| || ||| |||||||||||||| ||||||| |||||||||    
T  11272617 cgttcatcttctatttgggcactctctaggaatccaagttcactcatag 11272569  T

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