View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_high_18 (Length: 238)

Name: NF18356_high_18
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18356_high_18
NF18356_high_18
[»] chr6 (18 HSPs)
chr6 (1-224)||(22206954-22207163)
chr6 (1-224)||(20235836-20236051)
chr6 (1-224)||(22129820-22130035)
chr6 (1-119)||(18995500-18995618)
chr6 (1-135)||(20083732-20083866)
chr6 (1-135)||(18990788-18990922)
chr6 (1-135)||(18979436-18979570)
chr6 (1-135)||(24387143-24387270)
chr6 (19-92)||(22001854-22001927)
chr6 (1-89)||(20233467-20233555)
chr6 (1-89)||(22127451-22127539)
chr6 (19-98)||(22085913-22085992)
chr6 (19-93)||(21968030-21968104)
chr6 (165-224)||(18995670-18995729)
chr6 (185-220)||(18979615-18979650)
chr6 (185-220)||(18990967-18991002)
chr6 (185-220)||(20083911-20083946)
chr6 (185-220)||(24387063-24387098)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-224)||(7275-7493)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-119)||(49841-49959)
scaffold0074 (165-224)||(49730-49789)
[»] chr8 (1 HSPs)
chr8 (1-101)||(10401437-10401537)
[»] chr1 (2 HSPs)
chr1 (19-98)||(47619485-47619564)
chr1 (1-93)||(47627662-47627754)
[»] chr5 (3 HSPs)
chr5 (16-92)||(469770-469846)
chr5 (40-98)||(453837-453895)
chr5 (3-52)||(9103030-9103079)
[»] chr7 (2 HSPs)
chr7 (40-95)||(19939301-19939356)
chr7 (40-95)||(19970440-19970495)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22207163 - 22206954
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  22207163 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacatataaccactgcaaaata 22207064  T
Q  101 aattaaatgtattataattaagaagaagtgggaaacgatttgtaccnnnnnnnnnnnnngagtagaaaaagacgacaaaggggtcaacattcaaaactta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||               |  | ||||||| || ||||||||||||||||||||||||    
T  22207063 aattaaatgtattataattaagaagaagtgggaaacgatttgtac--------------aaaaaaaaaaagaagataaaggggtcaacattcaaaactta 22206978  T
Q  201 caatgttccaactattctatttgt 224  Q
    ||||||||||||||||||||||||    
T  22206977 caatgttccaactattctatttgt 22206954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20235836 - 20236051
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||    
T  20235836 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccactacaaaata 20235935  T
Q  101 aattaaatgtattataattaagaagaagtgggaaacgatttgtaccnnnnnnnnnnnnngagtagaaaaagacgacaaaggggtcaacattcaaaactta 200  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||                ||||||||||||  ||| ||||||||||||||||||||||    
T  20235936 aattaaatgtattttaattaagaataagtgggaaaagatttgta--------taaaaaaaagtagaaaaagataacagaggggtcaacattcaaaactta 20236027  T
Q  201 caatgttccaactattctatttgt 224  Q
    |||||||||||| |||||||||||    
T  20236028 caatgttccaacaattctatttgt 20236051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22129820 - 22130035
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||    
T  22129820 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccactacaaaata 22129919  T
Q  101 aattaaatgtattataattaagaagaagtgggaaacgatttgtaccnnnnnnnnnnnnngagtagaaaaagacgacaaaggggtcaacattcaaaactta 200  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||                ||||||||||||  ||| ||||||||||||||||||||||    
T  22129920 aattaaatgtattttaattaagaataagtgggaaaagatttgta--------taaaaaaaagtagaaaaagataacagaggggtcaacattcaaaactta 22130011  T
Q  201 caatgttccaactattctatttgt 224  Q
    |||||||||||| |||||||||||    
T  22130012 caatgttccaacaattctatttgt 22130035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18995500 - 18995618
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||    
T  18995500 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaata 18995599  T
Q  101 aattaaatgtattataatt 119  Q
    ||||||||||||| |||||    
T  18995600 aattaaatgtattttaatt 18995618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20083732 - 20083866
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||| || ||||    
T  20083732 ataatctctataagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaacattacatattccggagacatataaccactacataata 20083831  T
Q  101 aattaaatgtattataattaagaagaagtgggaaa 135  Q
    ||||||||||| | |||||||||||||| ||||||    
T  20083832 aattaaatgtaatttaattaagaagaagagggaaa 20083866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18990788 - 18990922
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| | ||||||||||  |||||||||||    
T  18990788 ataatctctaaaagcataactccaaaactataaatgtcggaattttcagaaaattgtccaaacattacatattccggagacatataaatactgcaaaata 18990887  T
Q  101 aattaaatgtattataattaagaagaagtgggaaa 135  Q
    ||||||||||| | |||||||||||||| ||||||    
T  18990888 aattaaatgtaatttaattaagaagaagagggaaa 18990922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18979436 - 18979570
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||| | ||||||||||||||| || ||||    
T  18979436 ataatctctacaagcataactccaaaactatatatgtcggatttttcagaaaattgtccaaacattacatattccggagacatataaccactacataata 18979535  T
Q  101 aattaaatgtattataattaagaagaagtgggaaa 135  Q
    ||||||||||| | |||||||||||||| ||||||    
T  18979536 aattaaatgtaatttaattaagaagaagagggaaa 18979570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24387270 - 24387143
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||       ||||||||||||||| |||||||    
T  24387270 ataatctcgaaaagcagaactccaaaactataaatgtcggatttttcagaaaattgtccaaacattacat-------agacatataaccactacaaaata 24387178  T
Q  101 aattaaatgtattataattaagaagaagtgggaaa 135  Q
    ||||||||||| | |||||||||||||| ||||||    
T  24387177 aattaaatgtaatttaattaagaagaagagggaaa 24387143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 22001854 - 22001927
Alignment:
Q  19 actccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccact 92  Q
    ||||||||||||||||| || |||||||||||||||||||  | |||||||||||||| |||||||||||||||    
T  22001854 actccaaaactataaatatctgatttttcagaaaattgtctaaacattgcatattctggagacatataaccact 22001927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20233555 - 20233467
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataacc 89  Q
    ||||| ||||||| ||| ||||||||||||||||  || ||||| ||||||||||| |||||||| |||||||||| ||||||||||||    
T  20233555 ataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 20233467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22127539 - 22127451
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataacc 89  Q
    ||||| ||||||| ||| ||||||||||||||||  || ||||| ||||||||||| |||||||| |||||||||| ||||||||||||    
T  22127539 ataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 22127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 22085913 - 22085992
Alignment:
Q  19 actccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaa 98  Q
    ||||||||||||||||  || |||||||||||||||||||| | ||||||||||||||  ||||||||||||||| ||||    
T  22085913 actccaaaactataaacatctgatttttcagaaaattgtccaaacattgcatattctggcgacatataaccactgtaaaa 22085992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 21968030 - 21968104
Alignment:
Q  19 actccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactg 93  Q
    ||||||||||||||||  || |||||||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  21968030 actccaaaactataaacatctgatttttcagaaaattgtcaaaacattgcatattctggagacatataaccactg 21968104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 18995670 - 18995729
Alignment:
Q  165 gaaaaagacgacaaaggggtcaacattcaaaacttacaatgttccaactattctatttgt 224  Q
    ||||||||  ||| |||| ||||||||||||||||||||||||||| | |||||||||||    
T  18995670 gaaaaagataacagagggatcaacattcaaaacttacaatgttccagcaattctatttgt 18995729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 18979615 - 18979650
Alignment:
Q  185 caacattcaaaacttacaatgttccaactattctat 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  18979615 caacattcaaaacttacaatgttccaacaattctat 18979650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 18990967 - 18991002
Alignment:
Q  185 caacattcaaaacttacaatgttccaactattctat 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  18990967 caacattcaaaacttacaatgttccaacaattctat 18991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 20083911 - 20083946
Alignment:
Q  185 caacattcaaaacttacaatgttccaactattctat 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  20083911 caacattcaaaacttacaatgttccaacaattctat 20083946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 24387098 - 24387063
Alignment:
Q  185 caacattcaaaacttacaatgttccaactattctat 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  24387098 caacattcaaaacttacaatgttccaacaattctat 24387063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7493 - 7275
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||    
T  7493 ataatctctaaaagcataactccaaaactataaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaata 7394  T
Q  101 aattaaatgtattataattaagaagaagtgggaaacgatttgtaccnnnnnnnnnnnnngagtagaaaaagacgacaaaggggtcaacattcaaaactta 200  Q
    ||||||||||||| |||||| ||||  ||| |||| |||||| |||             |||||||||||||  ||| ||| ||||||||||||||||||    
T  7393 aattaaatgtattttaattatgaagttgtgcgaaaagatttgaacc-----aaaaaaaagagtagaaaaagataacagaggtgtcaacattcaaaactta 7299  T
Q  201 caatgttccaactattctatttgt 224  Q
    | |||||||| | |||||||||||    
T  7298 ctatgttccagcaattctatttgt 7275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 49959 - 49841
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||    
T  49959 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaata 49860  T
Q  101 aattaaatgtattataatt 119  Q
    ||||||||||||| |||||    
T  49859 aattaaatgtattttaatt 49841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 49789 - 49730
Alignment:
Q  165 gaaaaagacgacaaaggggtcaacattcaaaacttacaatgttccaactattctatttgt 224  Q
    ||||||||  ||| |||| ||||||||||||||||||||||||||| | |||||||||||    
T  49789 gaaaaagataacagagggatcaacattcaaaacttacaatgttccagcaattctatttgt 49730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10401437 - 10401537
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaata 100  Q
    ||||| || |||| ||| ||||||||||||||||  || ||||| || ||||||||||| |||||||||||||||| ||| |||||||| || |||||||    
T  10401437 ataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacctctacaaaata 10401536  T
Q  101 a 101  Q
    |    
T  10401537 a 10401537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 47619564 - 47619485
Alignment:
Q  19 actccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaa 98  Q
    |||||||||||| ||| ||| ||||||||||| |||| ||| |||||||||||||| | |||||||||||||||| ||||    
T  47619564 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaa 47619485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 47627754 - 47627662
Alignment:
Q  1 ataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactg 93  Q
    |||||||| | || ||| |||||||||||| |||  || || || || |||||||||||  ||||||||||||| | |||||| |||||||||    
T  47627754 ataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgtaaccactg 47627662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 469770 - 469846
Alignment:
Q  16 ataactccaaaactataaatgtcggatttttcagaaaattgtccgagcattgcatattctgaagacatataaccact 92  Q
    ||||||||||||||  | |  |||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||    
T  469770 ataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccact 469846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 453837 - 453895
Alignment:
Q  40 gatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgcaaaa 98  Q
    |||||||| ||| | |||||  ||||||||||||| |||||||||||||||||| ||||    
T  453837 gatttttctgaataatgtccatgcattgcatattcggaagacatataaccactggaaaa 453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9103079 - 9103030
Alignment:
Q  3 aatctctaaaagcataactccaaaactataaatgtcggatttttcagaaa 52  Q
    ||||||||||| ||||||||||| | ||||||||||  ||||||||||||    
T  9103079 aatctctaaaatcataactccaagaatataaatgtcctatttttcagaaa 9103030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 19939356 - 19939301
Alignment:
Q  40 gatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgca 95  Q
    ||||| ||||||||  ||||  ||||||||||||||| ||||||||||||||||||    
T  19939356 gatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgca 19939301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 19970495 - 19970440
Alignment:
Q  40 gatttttcagaaaattgtccgagcattgcatattctgaagacatataaccactgca 95  Q
    ||||| ||||||||  ||||  ||||||||||||||| ||||||||||||||||||    
T  19970495 gatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgca 19970440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University