View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_high_20 (Length: 237)
Name: NF18356_high_20
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45050155 - 45049935
Alignment:
| Q |
1 |
attctccaattaaggcacagtaggtggtctgtgataaacaggacacttccactcatgtaacaactttgaggacccaggtagccactgccttttatattca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45050155 |
attctccaattaaggcacagtaggtggtgtgtgataaacaggacacttccactcatgtaacaactttgaggacccaggtagccactgccttttatattca |
45050056 |
T |
|
| Q |
101 |
gctttgggatcaaattgtgtccatcaatctgtcccaaaaatataccataattgttaggatcttcttaaactctgaaatggacataatttaatgaaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45050055 |
gctttgggatcaaattgtgtccatcaatctgtcccaaaaatataccataattgttaggatcttcttaaactctgaaatggacataatttaatgaaaaata |
45049956 |
T |
|
| Q |
201 |
tatgatttaacatcaagatag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45049955 |
tatgatttaacatcaagatag |
45049935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26009130 - 26008910
Alignment:
| Q |
1 |
attctccaattaaggcacagtaggtggtctgtgataaacaggacacttccactcatgtaacaactttgaggacccaggtagccactgccttttatattca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26009130 |
attctccaattaaggcacaataggtggtgtgtgataaacaggacacttccactcatgtaacaactttgaggacttaggtagccactgccttttatattca |
26009031 |
T |
|
| Q |
101 |
gctttgggatcaaattgtgtccatcaatctgtcccaaaaatataccataattgttaggatcttcttaaactctgaaatggacataatttaatgaaaaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
26009030 |
gctttgggatcaaattgtgtccatcaatctgtcccaaaaatataccataattgttgggatctttttaaactccgaaatggacataatttaatgaaaaata |
26008931 |
T |
|
| Q |
201 |
tatgatttaacatcaagatag |
221 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
26008930 |
tatgatttagcatcaagatag |
26008910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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