View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_high_4 (Length: 420)

Name: NF18356_high_4
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18356_high_4
NF18356_high_4
[»] chr3 (2 HSPs)
chr3 (13-402)||(36743697-36744086)
chr3 (300-332)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (238-337)||(6392095-6392194)
chr8 (202-337)||(6364472-6364607)
chr8 (202-337)||(7460671-7460806)
chr8 (202-334)||(6290510-6290642)
chr8 (202-337)||(6353599-6353734)
chr8 (251-337)||(6411259-6411345)
chr8 (261-337)||(6264930-6265006)
chr8 (261-337)||(6425289-6425365)
chr8 (261-337)||(6275755-6275831)
chr8 (222-337)||(6333183-6333298)
chr8 (222-337)||(6371303-6371418)
chr8 (309-347)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (263-343)||(42694385-42694465)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 36743697 - 36744086
Alignment:
Q  13 aatatcgcaaggaccgaattttctttgccaataaggtaccaaacaactttaactttactatttttaacttcggtatcaaaataacttttaagctcnnnnn 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         
T  36743697 aatatcgcaaggaccgaattttctttgccaataaggtaccaaacaactttaactttattatttttaacttcggtatcaaaataacttttaagctcaaaaa 36743796  T
Q  113 nngttgggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttcca 212  Q
      || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743797 aagtcgggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttcca 36743896  T
Q  213 catgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743897 catgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatg 36743996  T
Q  313 attatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743997 attatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatc 36744086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  300 gacagaatctatgattatgatgtttacaatgat 332  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  238 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 337  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
Q  202 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 301  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  302 cagaatctatgattatgatgtttacaatgatttggg 337  Q
     ||||| |||||||||||||| ||||||||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgatttggg 6364472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
Q  202 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 301  Q
    |||||||||||  || ||  ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  302 cagaatctatgattatgatgtttacaatgatttggg 337  Q
    |||||| |||||||||||||| |||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatgacttggg 7460671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
Q  202 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 301  Q
    |||||||||||  |||||  ||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  ||||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  302 cagaatctatgattatgatgtttacaatgattt 334  Q
     ||||| |||||||| ||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgattt 6290510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
Q  202 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 301  Q
    |||||||||||  |||||  || |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  302 cagaatctatgattatgatgtttacaatgatttggg 337  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgatttggg 6353599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 337
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  251 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 337  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  261 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 337  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  261 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 337  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  261 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 337  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 337
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
Q  222 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 321  Q
    ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||||    
T  6333298 ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg 6333199  T
Q  322 tttacaatgatttggg 337  Q
    |||||||||| |||||    
T  6333198 tttacaatgacttggg 6333183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 337
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
Q  222 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 321  Q
    ||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||||    
T  6371418 ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg 6371319  T
Q  322 tttacaatgatttggg 337  Q
    | ||||||||||||||    
T  6371318 tctacaatgatttggg 6371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  309 tatgattatgatgtttacaatgatttgggaaatccagat 347  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  263 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 343  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University