View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_high_9 (Length: 364)

Name: NF18356_high_9
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18356_high_9
NF18356_high_9
[»] chr1 (12 HSPs)
chr1 (18-364)||(4640539-4640875)
chr1 (301-364)||(4641736-4641799)
chr1 (308-364)||(38931325-38931381)
chr1 (304-362)||(27418177-27418234)
chr1 (327-364)||(48835097-48835134)
chr1 (327-363)||(11031443-11031479)
chr1 (327-363)||(11032219-11032255)
chr1 (326-364)||(30466193-30466231)
chr1 (303-348)||(29334241-29334286)
chr1 (303-348)||(43316384-43316429)
chr1 (227-266)||(1623946-1623986)
chr1 (304-363)||(32537657-32537716)
[»] chr6 (4 HSPs)
chr6 (301-363)||(34034180-34034242)
chr6 (301-363)||(34035018-34035080)
chr6 (19-69)||(34034404-34034454)
chr6 (313-361)||(24125986-24126034)
[»] chr5 (7 HSPs)
chr5 (19-192)||(4554858-4555030)
chr5 (304-364)||(4789531-4789591)
chr5 (327-364)||(42650768-42650805)
chr5 (304-364)||(6804902-6804962)
chr5 (305-364)||(12330159-12330218)
chr5 (328-364)||(26712389-26712425)
chr5 (328-364)||(26982127-26982163)
[»] chr4 (12 HSPs)
chr4 (300-363)||(22499110-22499173)
chr4 (19-69)||(22499736-22499786)
chr4 (301-363)||(22499948-22500010)
chr4 (313-361)||(47377584-47377632)
chr4 (327-362)||(34371475-34371510)
chr4 (313-362)||(232035-232084)
chr4 (327-364)||(25970117-25970154)
chr4 (313-348)||(34154821-34154856)
chr4 (313-364)||(39429923-39429974)
chr4 (327-361)||(6246798-6246832)
chr4 (313-362)||(23425193-23425242)
chr4 (327-364)||(36450739-36450776)
[»] chr3 (9 HSPs)
chr3 (304-362)||(45501271-45501329)
chr3 (327-364)||(49161808-49161845)
chr3 (304-364)||(8653697-8653757)
chr3 (313-364)||(51421661-51421712)
chr3 (327-364)||(33455781-33455818)
chr3 (304-364)||(8652821-8652881)
chr3 (306-364)||(33968192-33968250)
chr3 (304-348)||(44406936-44406980)
chr3 (306-362)||(45297562-45297618)
[»] chr2 (10 HSPs)
chr2 (304-364)||(36390968-36391028)
chr2 (303-364)||(7868117-7868178)
chr2 (305-364)||(5005473-5005532)
chr2 (107-153)||(41519719-41519765)
chr2 (313-362)||(36391658-36391707)
chr2 (327-363)||(6084883-6084919)
chr2 (321-364)||(34617664-34617707)
chr2 (301-363)||(38780038-38780100)
chr2 (327-364)||(23875251-23875288)
chr2 (328-364)||(23876064-23876100)
[»] scaffold2003 (1 HSPs)
scaffold2003 (303-364)||(507-568)
[»] chr7 (9 HSPs)
chr7 (327-364)||(29060739-29060776)
chr7 (327-364)||(42607092-42607129)
chr7 (321-364)||(24996677-24996720)
chr7 (306-364)||(40320389-40320447)
chr7 (321-362)||(24995865-24995906)
chr7 (327-362)||(27599224-27599259)
chr7 (327-362)||(27600095-27600130)
chr7 (321-364)||(44541702-44541745)
chr7 (304-348)||(30915761-30915805)
[»] chr8 (5 HSPs)
chr8 (308-364)||(37562306-37562362)
chr8 (304-348)||(40450963-40451007)
chr8 (313-364)||(42345405-42345456)
chr8 (329-361)||(12350656-12350688)
chr8 (327-363)||(43433823-43433859)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 4640875 - 4640539
Alignment:
Q  18 tatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccatagaaatcttgtcagtagagataagaggatttactacctcatacatggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4640875 tatttattcatgtttaactatttgtcacttgtagagagaatcataagtccatagaaattttgtcagtagagacaagaggatttactacctcatacatggt 4640776  T
Q  118 tctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaannnnnnnnaggtttgaaggagatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||    
T  4640775 tctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatggattttggaaaatcaattttttttaggtttgaaggagatga 4640676  T
Q  218 agaaaaagagttggagcagcagcgtttgtgggtgagtggtggtgagtgtgagaaannnnnnnggtgttgaatgtctatgataatctatttgatccaatgg 317  Q
    |||||||||||||||||| |||||||||||          |||||||||||||||       |||||||||||||||||||||||||||||||| |||||    
T  4640675 agaaaaagagttggagcaacagcgtttgtg----------ggtgagtgtgagaaaattttttggtgttgaatgtctatgataatctatttgatctaatgg 4640586  T
Q  318 ttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  4640585 ttgaaaattactttcccatggtgggaaacaattcccctttaccatgc 4640539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 4641736 - 4641799
Alignment:
Q  301 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4641736 tctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcccctttcccatgc 4641799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 38931381 - 38931325
Alignment:
Q  308 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||| ||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  38931381 gatctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgc 38931325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 27418234 - 27418177
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    |||||||| ||||||| |||||||||||  ||||||||||||||||| |||||||||||    
T  27418234 atttgatctaatggttaaaaattactttttcatggtgggaaacaatt-ccctttcccat 27418177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 48835097 - 48835134
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  48835097 actttcccatggtggaaaacaattcccctttcccatgc 48835134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 11031479 - 11031443
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11031479 actttcccatggtgggaaactattcccctttcccatg 11031443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 11032219 - 11032255
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11032219 actttcccatggtgggaaactattcccctttcccatg 11032255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 30466231 - 30466193
Alignment:
Q  326 tactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  30466231 tactttcccatggtgggaaacaactccccattcccatgc 30466193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 29334286 - 29334241
Alignment:
Q  303 tatttgatccaatggttgaaaattactttcccatggtgggaaacaa 348  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  29334286 tatttgatctaatgggtaaaatttactttcccatggtgggaaacaa 29334241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 43316429 - 43316384
Alignment:
Q  303 tatttgatccaatggttgaaaattactttcccatggtgggaaacaa 348  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  43316429 tatttgatcaaatggataaaatttactttcccatggtgggaaacaa 43316384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 1623946 - 1623986
Alignment:
Q  227 gttggagcagcagc-gtttgtgggtgagtggtggtgagtgt 266  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  1623946 gttggatcagcagccgtttgtgggtgagtggtggtgagtgt 1623986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 32537716 - 32537657
Alignment:
Q  304 atttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||| |||| || |||||||||||||||||| ||||  |||||||||||    
T  32537716 atttgatccaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatg 32537657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 34034242 - 34034180
Alignment:
Q  301 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatg 363  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||    
T  34034242 tctatttgatccaatggtttaaaataactttcccatggtgggaagcaattctcctttcccatg 34034180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 34035018 - 34035080
Alignment:
Q  301 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatg 363  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||    
T  34035018 tctatttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttcccatg 34035080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 34034454 - 34034404
Alignment:
Q  19 atttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 69  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  34034454 atttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 34034404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 24126034 - 24125986
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttccca 361  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  24126034 aatggctgaaaataactttcccatggtgggaaacaactcccctttccca 24125986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 4555030 - 4554858
Alignment:
Q  19 atttattcatgtttaactatttgtcacttgtagagagaatcacaagtccatagaaatcttgtcagtagagataagaggatttactacctcatacatggtt 118  Q
    ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||  ||||| |||||  || ||| ||| | || |||||||||||||| ||||    
T  4555030 atttatttatgtttaattatttgtcatttgtagagaaaatcacatgcccaaggaaattttgtccctatagaaaagggtatctactacctcatacacggtt 4554931  T
Q  119 ctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaa 192  Q
    |||  ||||||| |||||||||||  |||||| ||  | |||| |||| |||| ||||  ||||||||||||||    
T  4554930 cttcattttaatagtgaaattttgctattgaagttgaactgacggtgacaagggaatg-gttttggaaaatcaa 4554858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 4789591 - 4789531
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||| ||||||  | ||| |||||||||||||||||||||| |||||||||||||||    
T  4789591 atttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgc 4789531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 42650805 - 42650768
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  42650805 actttcccatggtgaaaaacaattcccctttcccatgc 42650768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 6804962 - 6804902
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||  |||||  |||| |||||| |||||||||||||||| ||| |||||||||||    
T  6804962 atttgatctgatggtcaaaaagtacttttccatggtgggaaacaactcctctttcccatgc 6804902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 12330218 - 12330159
Alignment:
Q  305 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| ||||  ||||||||||||    
T  12330218 tttgatctaatggttaaaaattaactttcccatggtgggaaa-aattagcctttcccatgc 12330159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 26712389 - 26712425
Alignment:
Q  328 ctttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||| | |||||||||||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgc 26712425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 26982127 - 26982163
Alignment:
Q  328 ctttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||| | |||||||||||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgc 26982163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 22499173 - 22499110
Alignment:
Q  300 atctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||||||| ||||| ||||||||||| ||| ||||||||| |||||||||||    
T  22499173 atctatttgatccaatggtttaaaataactttcccatgatggaaaacaattctcctttcccatg 22499110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 22499736 - 22499786
Alignment:
Q  19 atttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 69  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22499736 atttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 22499786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 22499948 - 22500010
Alignment:
Q  301 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatg 363  Q
    ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||||    
T  22499948 tctatttgatccaatggtttaaaataactttcctatggtggaaaacaattctcctttcccatg 22500010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 47377584 - 47377632
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttccca 361  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  47377584 aatggctgaaaataactttcccatggtgggaaacaactcccctttccca 47377632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 34371510 - 34371475
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccat 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  34371510 actttcccatggtgggaaacaattcccctttcccat 34371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 232035 - 232084
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||||||    
T  232035 aatggttaaaatttactttcccatggtgggaaacaacttccctttcccat 232084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 25970154 - 25970117
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25970154 actttcccatggtgggaaacaactcccctttcccatgc 25970117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 34154856 - 34154821
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaa 348  Q
    |||||||||||| |||||||||||||||||||||||    
T  34154856 aatggttgaaaaatactttcccatggtgggaaacaa 34154821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 39429923 - 39429974
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||||    
T  39429923 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgc 39429974  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 6246832 - 6246798
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttccca 361  Q
    |||||||||||||||||||||||| ||||||||||    
T  6246832 actttcccatggtgggaaacaatttccctttccca 6246798  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 23425193 - 23425242
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||    
T  23425193 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccat 23425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 36450776 - 36450739
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  36450776 actttcccatggtggaaaacaactcccctttcccatgc 36450739  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 45501271 - 45501329
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||    
T  45501271 atttgatccaatggtttaaatttactttcccatggtggaaaacaactcccctttcccat 45501329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 49161808 - 49161845
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49161808 actttcccatggtgggaaacaattcccctttcccatgc 49161845  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 8653697 - 8653757
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||| ||||||| ||| |||||||| |||||||||||||||| ||||||| ||||||    
T  8653697 atttgatcaaatggttaaaatttactttctcatggtgggaaacaatcccccttttccatgc 8653757  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 51421661 - 51421712
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  51421661 aatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgc 51421712  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 33455781 - 33455818
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33455781 actttcctatggtgggaaacaattcccctttcccatgc 33455818  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 8652881 - 8652821
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||| ||| ||||||  ||| |||||||||||||||||||| | |||||||||||||||||    
T  8652881 atttaatcaaatggtgaaaatttactttcccatggtgggaaccgattcccctttcccatgc 8652821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 33968250 - 33968192
Alignment:
Q  306 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||| ||||||  |||| || |||||||||||||||||||| | |||||||||||||    
T  33968250 ttgatctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttcccatgc 33968192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 44406936 - 44406980
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 348  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  44406936 atttgatctaatgggtaaaatttactttcccatggtgggaaacaa 44406980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 45297618 - 45297562
Alignment:
Q  306 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    |||||| ||||||| ||||  ||||||||||| |||||||||| || ||||||||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccat 45297562  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 36391028 - 36390968
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| | |||||||||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgc 36390968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 7868117 - 7868178
Alignment:
Q  303 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||| | ||||| ||| |||||||||||||||||||||||| ||||||||| |||||    
T  7868117 tatttgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgc 7868178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 5005532 - 5005473
Alignment:
Q  305 tttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||||||||||||   | || |||||||||| ||||||||||||||||||||||||||    
T  5005532 tttgatccaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgc 5005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 41519719 - 41519765
Alignment:
Q  107 tcatacatggttctttgttttaattgtgaaattttgtcattgaaatt 153  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaatt 41519765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 36391658 - 36391707
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    ||||||| ||| ||||||||||||||||| |||||| |||||||||||||    
T  36391658 aatggttaaaatttactttcccatggtggaaaacaactcccctttcccat 36391707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 6084919 - 6084883
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatg 363  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6084919 actttcccatgatgggaaacaattcccctttcccatg 6084883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 364
Target Start/End: Complemental strand, 34617707 - 34617664
Alignment:
Q  321 aaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  34617707 aaaataactttcccatggtgggaaacaattatcctttcccatgc 34617664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 38780038 - 38780100
Alignment:
Q  301 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||  || ||||| ||||||||||| ||| || |||||| |||||||||||    
T  38780038 tctatttgatccaataatttaaaataactttcccatgatggaaagcaattctcctttcccatg 38780100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 23875288 - 23875251
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||| || |||||||||||||||||||||||    
T  23875288 actttcccatgatgcgaaacaattcccctttcccatgc 23875251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 23876064 - 23876100
Alignment:
Q  328 ctttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgc 23876100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 507 - 568
Alignment:
Q  303 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||| | ||||| ||| ||||||| |||||||||||||||| |||||||||||||||    
T  507 tatttgatctagtggttaaaatttacttttccatggtgggaaacaactcccctttcccatgc 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 29060739 - 29060776
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29060739 actttcccatggtgggaaacaattcccctttcccatgc 29060776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 42607129 - 42607092
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42607129 actttcccatggtgggaaacaattcccctttcccatgc 42607092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 24996677 - 24996720
Alignment:
Q  321 aaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  24996677 aaaaatactttcccatggtgggaaacaactcccctttcccatgc 24996720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 40320389 - 40320447
Alignment:
Q  306 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||||| ||||||||||||  ||||| |||||||||||||||| || ||||||||||||    
T  40320389 ttgatctaatggttgaaaaaaacttttccatggtgggaaacaactctcctttcccatgc 40320447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 24995906 - 24995865
Alignment:
Q  321 aaaattactttcccatggtgggaaacaattcccctttcccat 362  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  24995906 aaaaatactttcccatggtgggaaacaactcccctttcccat 24995865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 27599259 - 27599224
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccat 362  Q
    |||||||||||||||||||||| |||||||||||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccat 27599224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 27600095 - 27600130
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccat 362  Q
    |||||||||||||||||||||| |||||||||||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccat 27600130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 44541702 - 44541745
Alignment:
Q  321 aaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||| |||||||||||||| |||||||||||| |||||||||||    
T  44541702 aaaaatactttcccatggtcggaaacaattccactttcccatgc 44541745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 30915805 - 30915761
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 348  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  30915805 atttgatctaatgggtaaaatttactttcccatggtgggaaacaa 30915761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 37562362 - 37562306
Alignment:
Q  308 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    |||| ||||||| ||| | ||||||| ||||||||||||||||| ||||||||||||    
T  37562362 gatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgc 37562306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 40450963 - 40451007
Alignment:
Q  304 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 348  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  40450963 atttgatctaatggttaaaatttactttcccatggtgggaaacaa 40451007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 42345456 - 42345405
Alignment:
Q  313 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgc 364  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||||    
T  42345456 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgc 42345405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 12350656 - 12350688
Alignment:
Q  329 tttcccatggtgggaaacaattcccctttccca 361  Q
    |||||||||||||||||||||| ||||||||||    
T  12350656 tttcccatggtgggaaacaatttccctttccca 12350688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 43433859 - 43433823
Alignment:
Q  327 actttcccatggtgggaaacaattcccctttcccatg 363  Q
    |||||||||||||||||||  ||||||||||||||||    
T  43433859 actttcccatggtgggaaatgattcccctttcccatg 43433823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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