View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18356_low_1 (Length: 538)
Name: NF18356_low_1
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Complemental strand, 36155283 - 36154774
Alignment:
| Q |
18 |
accttgtaccatacctgaataaaatggaacaatagtcaatatttcatgttttttaggnnnnnnnnttcgaaacattcttagtttgcaacaaattcaaata |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36155283 |
accttgtaccatatctgaataaaatggaacaatagtcaatatttcatgttttttaggaaaaaaaattcgaaacatttttagtttgcaacaaattcaaata |
36155184 |
T |
|
| Q |
118 |
acgggagnnnnnnnnntggtagaaagaagtagaattaaggttaatgattgagttactggataatttctattcaaatatatatcattgaaaagtaactgcc |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
36155183 |
acgggagaaaaaaaaatggtagaaagaagtagaattaaggttaatgattgagttactggataatttctattcacatat----cattgaaaagtaactgtc |
36155088 |
T |
|
| Q |
218 |
atagaaatgtactttcccaagaatatcttgataatcatgaaacaaacgtatcctaaagaccaagaaaaggaaactgccccttgaaatttgtcttttacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36155087 |
atagaaatgtactttcccaagaatatcttgataatcatgaaacaaacgtatcctaaagactaagaaaaggaaactgccccttgaaatttgtcttttacaa |
36154988 |
T |
|
| Q |
318 |
tggcgtgaatgttaatttgcacatttcaatgctaaatttcataagcttttgtgctgaatccaagataactgacagattttttccatctctactcattcag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36154987 |
tggcgtgaatgttaatttgcacatttcaatgctaaatttcataagcttttgtgctgaatccaagataactgacagattttttccatctttactcattcag |
36154888 |
T |
|
| Q |
418 |
ttcagctggctgacagcttttgcttgtctctaaacctttttatttaaaacctaagtaacactccttgtgaaaaataatctcttccaactaaacattaatc |
517 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154887 |
ttcagttggctgatagcttttgcttgtctctaaacctttttatttaaaacctaagtaacactccttgtgaaaaataatctcttccaactaaacattaatc |
36154788 |
T |
|
| Q |
518 |
ttccttatagtttt |
531 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36154787 |
ttccttatagtttt |
36154774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 134 - 531
Target Start/End: Complemental strand, 36160897 - 36160500
Alignment:
| Q |
134 |
tggtagaaagaagtagaattaaggttaatgattgagttactggataatttctattcaaatatatatcattgaaaagtaactgccatagaaatgtactttc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36160897 |
tggtagaaagaagtagaattaaggttaatgattgagttactagataatttctattcacatatatatcattgaaaagtaactaccatagaaatgtactttc |
36160798 |
T |
|
| Q |
234 |
ccaagaatatcttgataatcatgaaacaaacgtatcctaaagaccaagaaaaggaaactgccccttgaaatttgtcttttacaatggcgtgaatgttaat |
333 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
36160797 |
ccaagaatatcttgataa--atgaaacaaacgtatcctaaagactaagaaaaggaaactgcctcttgaaatttgtcttttgctatggcgtgaatgttaat |
36160700 |
T |
|
| Q |
334 |
ttgcacatttcaatgctaaatttcataagcttttgtgctgaatccaagataactgacagattttttccatctctactcattcagttcagctggctgacag |
433 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36160699 |
ttgcgcatttcaatgctaaatttcataagcttttgtgctgaatccaaagtaactgacagattttttccatctctactcattcagttcagctggctgacag |
36160600 |
T |
|
| Q |
434 |
cttttgc-ttgtctctaaacctttttatttaaaacctaagtaacactccttgtgaaaaataatctcttccaactaaa-cattaatcttccttatagtttt |
531 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36160599 |
cttttgctttgtctctaaacctttttatttaaaacctaagtaacactccttgtgaagaataatctcttccaactaaagcattaatcttccttatagtttt |
36160500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University