View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_low_11 (Length: 307)

Name: NF18356_low_11

Description: NF18356

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18356_low_11

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 126; E-Value: 5e-65

Query Start/End: Original strand, 18 - 171

Target Start/End: Original strand, 13590720 - 13590880

Alignment:

Q	18	gttaatgatgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttatt---tg	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	13590720	gttaatgatgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttattatttg	13590819	T

Q	115	tcttcaataa----tcctatgtaacaatgaatggaataaataaattttatgtggttcatca	171	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13590820	tcttcaattaatagtcctatgtaacaatgaatggaataaataaattttatgtggttcatca	13590880	T

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Target: chr8; HSP #2

Raw Score: 51; E-Value: 3e-20

Query Start/End: Original strand, 235 - 293

Target Start/End: Original strand, 13590944 - 13591002

Alignment:

Q	235	cctaagttgagtacaagatttggacaaaatataataaaatagaggaatatcacaggttc	293	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	13590944	cctaagttgaatacaagatttggacaaaatataataaaatagaggaatatcacatgttc	13591002	T

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