View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_13 (Length: 289)
Name: NF18356_low_13
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_13 |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 22207198 - 22207475
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaatatatacgctctttagt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22207198 |
caccatgttgcttatgacctcttgaatcatgtgagtgttatgatctaactataggaccctttcatttttcctattatgataaatatatacgctctttagt |
22207297 |
T |
|
| Q |
101 |
cagattttatatatttttgtatagaattttaaattactatagnnnnnnncccctcctagcaatcgaagagttaagaacaaaaactaattctttgcactta |
200 |
Q |
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| T |
22207298 |
cagattttatatatttttggatagaattttaaattactatagtttttttcccctcctagtaatcgaagagttaagaacaaaaactaattctttgcactta |
22207397 |
T |
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| Q |
201 |
catatatcacatacacccaggatgaaagaagatgaacagtaacatcatattataaatatgctttcttgtcttattcat |
278 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22207398 |
aatatatcacatacaaccaggatgaaagaagatgaacagtaacatcatattataaatatgctttcttgtcttattcat |
22207475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20235801 - 20235713
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaatatata |
89 |
Q |
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| T |
20235801 |
caccatgttgcttatgacctcttgaattatgtgagtgtaatgatctaacaatagtgccctttcatttttcgtattatgataaatatata |
20235713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22129785 - 22129697
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaatatata |
89 |
Q |
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| T |
22129785 |
caccatgttgcttatgacctcttgaattatgtgagtgtaatgatctaacaatagtgccctttcatttttcgtattatgataaatatata |
22129697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18995465 - 18995382
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaat |
84 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||||||| ||||||||||| |
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| T |
18995465 |
caccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcattagtatcctttcatttttcctgttatgataaat |
18995382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 18979398 - 18979330
Alignment:
| Q |
4 |
catgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcct |
72 |
Q |
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| T |
18979398 |
catgttgctgatggcctcttgaatcatgtgagtgcaatgatctagcagtagtatcctttcatttttcct |
18979330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 20083694 - 20083626
Alignment:
| Q |
4 |
catgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcct |
72 |
Q |
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| T |
20083694 |
catgttgctgatggcctcttgaatcatgtgagtgcaatgatctagcagtagtatcctttcatttttcct |
20083626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 49994 - 50077
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaat |
84 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||||||| ||||||||||| |
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| T |
49994 |
caccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcattagtatcctttcatttttccttttatgataaat |
50077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7528 - 7609
Alignment:
| Q |
1 |
caccatgttgcttatgacctcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataa |
82 |
Q |
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| T |
7528 |
caccatgttgcttatgacctcttgaatcatgtgagtgtaatgatctagcagtagtatcctttcatttttccttttatgataa |
7609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 15281 - 15217
Alignment:
| Q |
20 |
tcttgaattatgtgagtgttatgatctaactatagtaccctttcatttttcctattatgataaat |
84 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
15281 |
tcttgaattatgtgagtgtaatgatctaacaatagtaccctttcatttttccttttatgataaat |
15217 |
T |
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